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# Maintainer: Michael Schubert <mschu.dev at gmail>
pkgname=augustus
_pkgname=Augustus
pkgver=3.3.3
pkgrel=1
pkgdesc="A eucaryotic gene prediction program"
arch=('i686' 'x86_64')
url="http://augustus.gobics.de/"
license=('custom:Artistic-2.0')
depends=('samtools' 'htslib' 'bamtools')
source=($pkgname-$pkgver.tar.gz::https://github.com/Gaius-Augustus/Augustus/archive/v$pkgver.tar.gz)
sha256sums=('2fc5f9fd2f0c3bba2924df42ffaf55b5c130228cea18efdb3b6dfab9efa8c9f4')
options=(!strip)
prepare() {
cd $_pkgname-$pkgver
sed -i "/\/usr\/local\/bin/d" Makefile
sed -i "/bam2wig/d" auxprogs/Makefile # requires special dir structure of util
}
build() {
cd $_pkgname-$pkgver
make SAMTOOLS=/usr/include/bam
}
package() {
cd $_pkgname-$pkgver
make INSTALLDIR="$pkgdir" install
install -Dm644 src/LICENSE.TXT "$pkgdir"/usr/share/licenses/augustus/LICENSE
}
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