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# Maintainer: Ben Booth <benwbooth@gmail.com>
pkgname=bamtools-git
pkgver=20110606
pkgrel=1
pkgdesc="API and toolkit for reading, writing, and manipulating BAM (genome alignment) files."
arch=('i686' 'x86_64')
url="https://github.com/pezmaster31/bamtools"
license=('MIT')
groups=()
depends=()
makedepends=('git' 'cmake')
provides=('bamtools')
conflicts=()
replaces=()
backup=()
options=()
install=
source=()
noextract=()
md5sums=() #generate with 'makepkg -g'
_gitroot="https://github.com/pezmaster31/bamtools.git"
_gitname="bamtools"
build() {
cd "$srcdir"
msg "Connecting to GIT server...."
if [ -d $_gitname ] ; then
cd $_gitname && git pull origin
msg "The local files are updated."
else
git clone $_gitroot $_gitname
fi
msg "GIT checkout done or server timeout"
msg "Starting make..."
rm -rf "$srcdir/$_gitname-build"
git clone "$srcdir/$_gitname" "$srcdir/$_gitname-build"
cd "$srcdir/$_gitname-build"
mkdir build
pushd build
cmake ..
make
popd
}
package() {
cd "$srcdir/$_gitname-build"
mkdir "$pkgdir/usr"
cp -r bin lib "$pkgdir/usr"
mkdir -p "$pkgdir/usr/include/bamtools"
cp -r include/* "$pkgdir/usr/include/bamtools"
}
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