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# Maintainer: Clint Valentine <valentine.clint@gmail.com>
_pkg_ver=2.20.0
_pkg_build=422
_eula_ver=2-20
_guide_ver=15051736_v2
pkgname=bcl2fastq-bin
pkgver="${_pkg_ver}"."${_pkg_build}"
pkgrel=2
pkgdesc="Demultiplexes data and converts BCL files generated by Illumina sequencers to FASTQ for downstream analysis"
arch=('x86_64')
url=https://support.illumina.com/downloads/bcl2fastq-conversion-software-v"${_pkg_ver//./-}".html
license=('custom:illumina')
provides=('bcl2fastq')
conflicts=('bcl2fastq')
source=(
https://support.illumina.com/content/dam/illumina-support/documents/downloads/software/bcl2fastq/bcl2fastq2-v"${_pkg_ver//./-}"-linux-x86-64.zip
https://support.illumina.com/content/dam/illumina-support/documents/downloads/software/bcl2fastq/bcl2fastq2-v"${_eula_ver}"-eula.pdf
https://support.illumina.com/content/dam/illumina-support/documents/documentation/software_documentation/bcl2fastq/bcl2fastq2_guide_"${_guide_ver}".pdf
)
sha256sums=(
'3744bc1c02fff1dd17d18c8e8b8b2cc2405b37d7d248b8889f4f8a8fc220b434'
'0a8236fad01c86f72d43247606c7f6c029cebdedf23f4bcb691367602bd061de'
'72f27e701b9ff4af53d1754ae6d68de7d7bbec6c4e42467c6baeacdf48fb482a'
)
prepare() {
echo 'Download of this software requires agreement with EULA at:'
echo "https://support.illumina.com/content/dam/illumina-support/documents/downloads/software/bcl2fastq/bcl2fastq2-v${_eula_ver}-eula.pdf"
}
build() {
mkdir -p "${srcdir}"/"${pkgname}"-"${_pkg_ver}" && cd "$_"
mv ../bcl2fastq2-v"${_pkg_ver}"."${_pkg_build}"-Linux-x86_64.rpm ./
bsdtar -xf bcl2fastq2-v"${_pkg_ver}"."${_pkg_build}"-Linux-x86_64.rpm
}
package() {
install -Dm644 \
"${srcdir}"/bcl2fastq2-v"${_eula_ver}"-eula.pdf \
"${pkgdir}"/usr/share/licenses/bcl2fastq/bcl2fastq2-v"${_eula_ver}"-eula.pdf
install -Dm644 \
"${srcdir}"/bcl2fastq2_guide_"${_guide_ver}".pdf \
"${pkgdir}"/usr/share/doc/bcl2fastq/bcl2fastq2_guide_"${_guide_ver}".pdf
cd "${srcdir}"/"${pkgname}"-"${_pkg_ver}"
install -Dm644 usr/local/share/COPYRIGHT "${pkgdir}"/usr/share/licenses/bcl2fastq/COPYRIGHT
install -Dm644 usr/local/share/Changes "${pkgdir}"/usr/share/licenses/bcl2fastq/Changes
install -Dm755 usr/local/bin/bcl2fastq "${pkgdir}"/usr/bin/bcl2fastq
}
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