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# Maintainer: Sauliusl <luksaulius[at]gmail[dot]com>
pkgname=beads
pkgver=1.1
pkgrel=1
pkgdesc="Bias Elimination Algorithm for Deep Sequencing."
url="http://beads.sourceforge.net/"
arch=('x86_64')
license=('unknown')
depends=('python2' 'java-environment')
optdepends=()
makedepends=('python2')
conflicts=()
replaces=()
backup=()
install=()
source=("http://downloads.sourceforge.net/project/beads/BEADS-${pkgver}.tar.gz"
"beads.sh")
sha1sums=('f83587d3b8c7b1eb619d81e17499e8f8fdae3138'
'b30b472b1ff087eb3c015f00bd4619b346421cf5')
package() {
cd "${srcdir}/BEADS-${pkgver}"
python2 setup.py install --prefix=${pkgdir}/usr
# Rename the python file to have .py extension
mv ${pkgdir}/usr/bin/beads ${pkgdir}/usr/bin/beads.py
# install script that presets the classpath beforehand in place of it
install -Dm755 ${srcdir}/beads.sh ${pkgdir}/usr/bin/beads
# Install the java classes
install -d ${pkgdir}/usr/share/java/${pkgname}
install -Dm0644 BEADSjava.jar ${pkgdir}/usr/share/java/${pkgname}
}
# vim:set ts=2 sw=2 et:
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