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# Maintainer: Clint Valentine <valentine.clint@gmail.com>
# Contributer: Sebastian Wilzbach <sebi at wilzbach dot me>
pkgname=biopieces
pkgver=2.0
pkgrel=1
pkgdesc='Bioinformatic framework of tools easily used and easily created'
arch=('any')
url='http://maasha.github.io/biopieces/'
license=('GPL2')
depends=(
'perl'
'ruby'
'perl-svg'
'perl-bit-vector'
'perl-term-readkey'
'perl-dbi'
'perl-xml-parser'
'perl-carp-clan'
'perl-class-inspector'
'perl-html-parser'
'perl-soap-lite'
'perl-uri'
'perl-inline'
'perl-parse-recdescent'
'perl-dbd-mysql'
'ruby-gnuplot'
'perl-json-xs'
'python2'
'ruby-terminal-table'
)
optdepends=(
'blast: legacy blast'
'gnuplot'
'blat'
'bwa'
'bowtie'
'bowtie2'
'hmmer'
'mummer'
'muscle'
'velvet'
)
source=("${pkgname}"-"${pkgver}".tar.gz::https://github.com/maasha/"${pkgname}"/archive/"${pkgver}".tar.gz)
sha256sums=('484877c4a844ed1e6c70594248c44b9f19a6e7a1fd08456e28f2cc83425151e8')
package() {
cd "${srcdir}"/"${pkgname}"-"${pkgver}"
for script in bin/*; do
if [[ "${script}" =~ README ]]; then continue; fi
install -Dm755 "${script}" "${pkgdir}"/opt/"${pkgname}"/"${pkgname}"-"$( basename "${script}" )"
done
}
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