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# Maintainer: Yishen Miao <mys721tx@gmail.com>
# Maintainer: Nathaniel Stickney <nstickney@gmail.com>
# Contributor: Christian Krause ("wookietreiber") <kizkizzbangbang@googlemail.com>
# shellcheck disable=SC2034,SC2148,SC2154
pkgname=blast+
pkgver=2.14.0
pkgrel=3
pkgdesc="BLAST tool suite from NCBI (blastn, blastp, blastx, psiblast, etc)"
arch=('i686' 'x86_64')
url="http://blast.ncbi.nlm.nih.gov/"
license=('custom')
depends=(
'gcc-libs'
'libelf'
'zlib'
'bzip2'
'lzo'
'zstd'
'db'
'pcre'
'perl'
'python'
'lmdb'
'libuv'
'libnghttp2'
'sqlite'
)
makedepends=('cpio' 'gcc')
# conflicts with proj on libproj.so
conflicts=('blast' 'blast+-bin' 'ncbi-blast' 'proj')
provides=('blast')
replaces=('ncbi-blast')
source=(
"https://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/$pkgver/ncbi-blast-$pkgver+-src.tar.gz"
"cstdint.patch"
)
sha256sums=(
'bf477f1b0c3b82f0b7a7094bf003a9a83e37e3b0716c1df799060c4feab17500'
'7cae72ec356224d9a75c4ce1c6c276dcb22b9a36b3d92f9c57b024dff23cc7f2'
)
prepare() {
cd "$srcdir"/ncbi-blast-"$pkgver"+-src/c++ || exit
patch --forward --strip 1 --input="${srcdir}/cstdint.patch"
./configure \
--prefix=/usr \
--with-dll \
--with-mt
}
build() {
cd "$srcdir"/ncbi-blast-"$pkgver"+-src/c++ || exit
make
}
package() {
cd "$srcdir"/ncbi-blast-"$pkgver"+-src/c++ || exit
make prefix="$pkgdir"/usr install
chmod +x "$pkgdir"/usr/lib/*.so
install -d "$pkgdir"/usr/share/licenses/"$pkgname"
echo 'public domain' >"$pkgdir"/usr/share/licenses/"$pkgname"/LICENSE
}
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