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# Maintainer: Charles Vejnar <first name [dot] last name [at] gmail [dot] com>
# Contributor: Grey Christoforo <first name [at] last name [dot] net>
pkgname=bowtie2
pkgver=2.5.4
pkgrel=1
pkgdesc="Bowtie 2 is an ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequence."
arch=("x86_64")
url="https://bowtie-bio.sourceforge.net/bowtie2"
license=("GPL3")
depends=('zstd')
source=("$pkgname-$pkgver.tar.gz::https://github.com/BenLangmead/bowtie2/archive/v${pkgver}.tar.gz")
sha256sums=('841a6a60111b690c11d1e123cb5c11560b4cd1502b5cee7e394fd50f83e74e13')
prepare() {
cd "${srcdir}/${pkgname}-${pkgver}"
make clean
}
build() {
cd "${srcdir}/${pkgname}-${pkgver}"
make PREFIX=/usr WITH_ZSTD=1
}
package() {
cd "${srcdir}/${pkgname}-${pkgver}"
make PREFIX=/usr DESTDIR="${pkgdir}" install
install -dm755 "${pkgdir}/usr/share/doc/${pkgname}"
cp -a "${srcdir}/bowtie2-${pkgver}/doc" "${pkgdir}/usr/share/doc/${pkgname}"
}
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