blob: 9b0a3b9128d2b6a2bb23d1c6ad6c94d563a88811 (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
|
# Maintainer: Charles Vejnar <first name [dot] last name [at] gmail [dot] com>
# Contributor: Grey Christoforo <first name [at] last name [dot] net>
pkgname=bowtie2
pkgver=2.5.2
pkgrel=1
pkgdesc="Bowtie 2 is an ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequence."
arch=("x86_64")
url="https://bowtie-bio.sourceforge.net/bowtie2"
license=("GPL3")
depends=('zstd')
source=("$pkgname-$pkgver.tar.gz::https://github.com/BenLangmead/bowtie2/archive/v${pkgver}.tar.gz")
sha256sums=('2f86dbfbf3dcb8521d559f830594fe28ac6e4c40d81313a8c2bfb17c82a501e0')
prepare() {
cd "${srcdir}/${pkgname}-${pkgver}"
make clean
}
build() {
cd "${srcdir}/${pkgname}-${pkgver}"
make PREFIX=/usr WITH_ZSTD=1
}
package() {
cd "${srcdir}/${pkgname}-${pkgver}"
make PREFIX=/usr DESTDIR="${pkgdir}" install
install -dm755 "${pkgdir}/usr/share/doc/${pkgname}"
cp -a "${srcdir}/bowtie2-${pkgver}/doc" "${pkgdir}/usr/share/doc/${pkgname}"
}
|