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# Maintainer: Chocobo1 <chocobo1 AT archlinux DOT net>
pkgname=bowtie2-bin
pkgver=2.5.0
pkgrel=2
pkgdesc="Tool for aligning sequencing reads to long reference sequences"
arch=('x86_64' 'aarch64')
url="https://bowtie-bio.sourceforge.net/bowtie2/index.shtml"
license=('GPL')
depends=('glibc')
optdepends=('perl' 'python')
provides=("bowtie2=$pkgver")
conflicts=('bowtie2')
source_x86_64=("https://github.com/BenLangmead/bowtie2/releases/download/v$pkgver/bowtie2-$pkgver-linux-x86_64.zip")
source_aarch64=("https://github.com/BenLangmead/bowtie2/releases/download/v$pkgver/bowtie2-$pkgver-linux-aarch64.zip")
sha256sums_x86_64=('d5428b14019691669f038f34d232ec9a6c48f435fdc2d71a8e37dc8ba7b85613')
sha256sums_aarch64=('6cd79cd8251755c9486d06a333a6ec3f4c55f1fb7553c33ecd1e512bc3fca5bb')
package() {
cd "bowtie2-$pkgver-linux-$CARCH"
install -Dm755 bowtie2{,-*} -t "$pkgdir/usr/bin"
rm "$pkgdir/usr/bin"/*-debug
install -Dm644 {MANUAL,MANUAL.markdown,TUTORIAL} -t "$pkgdir/usr/share/doc/bowtie2"
install -Dm644 "doc"/* -t "$pkgdir/usr/share/doc/bowtie2/doc"
}
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