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# Maintainer: Michael Schubert <mschu.dev at gmail>
# Maintainer: Eugene Dvoretsky <radioxoma at gmail>
pkgname=cellprofiler-analyst-git
pkgver=2.2.0.r0.gf45d68a
pkgrel=1
pkgdesc="Analysis software for cellular images"
arch=('i686' 'x86_64')
url="http://www.cellprofiler.org/"
license=('GPLv2')
depends=(
'wxpython'
'python2-pytz'
'python2-numpy'
'python2-scipy'
'python2-matplotlib'
'python2-imaging'
# 'python2-mock'
'python2-scikit-learn'
'python2-pandas'
'python2-verlib'
'python2-seaborn'
'python2-javabridge'
'python2-bioformats')
optdepends=('cellprofiler: prepare data for CPA')
provides=('cellprofiler-analyst')
source=("$pkgname::git+https://github.com/CellProfiler/CellProfiler-Analyst#tag=2.2.0"
"cellprofiler-analyst.desktop")
sha256sums=('SKIP'
'SKIP')
pkgver() {
cd "$pkgname"
git describe --long --tags | sed 's/\([^-]*-g\)/r\1/;s/-/./g'
}
prepare() {
cd "$srcdir/$pkgname"
# Should be fixed in the source three
sed -i '1i#!/usr/bin/env python2' ./CellProfiler-Analyst.py
rm -rf `find "$pkgdir" -name "tests" -type d`
}
build() {
cd "$srcdir/$pkgname"
# python2 setup.py build # Unusable build system (only for Mac now)
python2 -m compileall cpa
}
package() {
# python2 setup.py install --root="$pkgdir" --optimize=1 # Unusable build system (only for Mac now)
pydir=`python2 -c "from distutils.sysconfig import get_python_lib; print get_python_lib()"`
mkdir -p "$pkgdir/$pydir"
cd "$srcdir/$pkgname"
cp -r cpa "$pkgdir/$pydir"
install -Dm755 CellProfiler-Analyst.py "$pkgdir/usr/bin/cellprofiler-analyst"
install -D LICENSE "$pkgdir/usr/share/licenses/$pkgname/LICENSE"
install -Dm644 "$srcdir/cellprofiler-analyst.desktop" "$pkgdir/usr/share/applications/cellprofiler-analyst.desktop"
}
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