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# Maintainer: Tim Yang <protonmail = timdyang>
pkgname=circos
pkgver=0.69_9
pkgrel=1
pkgdesc="A software package for visualizing data in a circular layout"
arch=(any)
url=http://circos.ca
license=(GPL)
depends=(
perl-carp
perl-clone
perl-config-general
perl-data-dumper
perl-digest-md5
perl-file-temp
perl-font-ttf
perl-gd
perl-getopt-long
perl-list-moreutils
perl-math-bezier
perl-math-round
perl-math-complex
perl-math-vecstat
perl-memoize
perl-params-validate
perl-pod-usage
perl-readonly
perl-regexp-common
perl-set-intspan
perl-statistics-basic
perl-storable
perl-svg
perl-text-balanced
perl-text-format
perl-time-hires
)
optdepends=('circos-docs: tutorials'
'circos-tools: addons')
source=(http://$pkgname.ca/distribution/$pkgname-${pkgver/_/-}.tgz)
noextract=($pkgname-${pkgver/_/-}.tgz)
sha256sums=(34d8d7ebebf3f553d62820f8f4a0a57814b610341f836b4740c46c3057f789d2)
package() {
# dist
bsdtar -xf $pkgname-${pkgver/_/-}.tgz -C "$pkgdir" \
-s ":^$pkgname-${pkgver/_/-}:opt/$pkgname:" \
$pkgname-${pkgver/_/-}/{bin,data,error,etc,fonts,lib,tiles}
# docs
bsdtar -xf $pkgname-${pkgver/_/-}.tgz -C "$pkgdir" \
-s ":^$pkgname-${pkgver/_/-}:usr/share/doc/$pkgname:" \
$pkgname-${pkgver/_/-}/{example,README,CITATION}
# sanitize
rm -f "$pkgdir"/opt/$pkgname/bin/{$pkgname.exe,compile.{bat,make}}
# find "$pkgdir" -exec sh -c \
# "file '{}' | grep -qE 'ELF|executable|directory' && chmod 755 '{}' || chmod 644 '{}'" \;
find "$pkgdir" -exec sh -c "ls -Fd '{}' | grep -q '.*[/\*]$' && chmod 755 '{}' || chmod 644 '{}'" \;
chown -R root:root "$pkgdir"
# symlinks
install -m 755 -d "$pkgdir"/usr/bin/
ln -sf /opt/$pkgname/bin/$pkgname "$pkgdir"/usr/bin/
ln -sf /opt/$pkgname/bin/gddiag "$pkgdir"/usr/bin/
}
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