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# Maintainer: Tomasz Zok <tomasz.zok [at] gmail.com>
pkgname=contrafold
pkgver=2.02
pkgrel=1
pkgdesc="CONditional TRAining for RNA Secondary Structure Prediction"
arch=('i686' 'x86_64')
url="http://contra.stanford.edu/contrafold/"
license=('BSD')
makedepends=('gcc>=4.1.3')
source=("http://contra.stanford.edu/contrafold/${pkgname}_v${pkgver/./_}.tar.gz"
"LBFGS.patch"
"Utilities.patch")
md5sums=('cea66c63df835fe7f790c7f49ce83ef3'
'7f5cc03bb145d7f4ff8e18ede22bbdd7'
'1edad72c52d336a0fa17862371dd60d0')
prepare() {
cd "$pkgname/src"
patch -p0 -i "$srcdir/LBFGS.patch"
patch -p0 -i "$srcdir/Utilities.patch"
}
build() {
cd "$pkgname/src"
make clean
make
}
package() {
cd "$pkgname/src"
install -d "$pkgdir/usr/bin/"
install contrafold "$pkgdir/usr/bin/"
}
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