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# Maintainer: a821 <a821 mail.de>
# Contributor: lukaszimmermann <luk.zim91 gmail.com>
# Contributor: florianbw <florian.bw gmail.com>
pkgname=cytoscape
pkgver=3.10.0
pkgrel=1
pkgdesc="Network Data Integration, Analysis, and Visualization in a Box"
arch=('any')
url=https://www.cytoscape.org
license=('LGPL')
depends=('java-runtime=17' 'bash')
source=("https://github.com/cytoscape/cytoscape/releases/download/${pkgver}/cytoscape-unix-${pkgver}.tar.gz"
"${pkgname}.desktop"
"${pkgname}.png"
"${pkgname}")
sha256sums=('c5f11534e5e9b4ca5cae2b2bf9aeb626bb97922d55d188c0fe3e144bb5fc9970'
'f4476545086f845e1cec5861169270da9f82a6ad4944972010827a567af0c7d0'
'135faa3f0beb8ecc1b704cf376408e8bd5f62f32ba50a84002c14321d0bb0b68'
'a7dc1d5197053cd1f2fc6e59c2538e854077877506b10c49f606f5e3aee19c2d')
prepare() {
cd ${pkgname}-unix-${pkgver}
sed -i 's#^\(vm_options_path\)=.*$#\1="\${HOME}/CytoscapeConfiguration"#' cytoscape.sh gen_vmoptions.sh
sed -i '/^LOCAL_CLASSPATH/a KARAF_INSTANCES="\${HOME}/CytoscapeConfiguration/instances"' framework/bin/karaf
sed -i 's#\${KARAF_HOME}/instances#\${KARAF_INSTANCES}#' framework/bin/karaf
}
package() {
install -d -m755 "${pkgdir}/opt"
cp -r cytoscape-unix-${pkgver} "${pkgdir}/opt/cytoscape"
install -Dm755 -t "${pkgdir}/usr/bin" "${pkgname}"
install -Dm644 -t "${pkgdir}/usr/share/pixmaps" "${pkgname}.png"
install -Dm644 -t "${pkgdir}/usr/share/applications" "${pkgname}.desktop"
}
# vim:set ts=2 sw=2 et:
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