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# Maintainer: eomarjee <eyaz.omarjee+arch@gmail.com>
# Contributor: florianbw <florian.bw@gmail.com>
pkgname=cytoscape
pkgver=3.4.0
pkgrel=2
pkgdesc='A software for visualizing molecular interaction networks and integration with gene expression profiles and other state data.'
arch=('any')
url=http://www.cytoscape.org
license=('LGPL2')
depends=('java-runtime>=8')
source=("http://chianti.ucsd.edu/cytoscape-$pkgver/cytoscape-$pkgver.tar.gz" \
'cytoscape.desktop' \
'cytoscape.png' \
'cytoscape')
md5sums=('be030bb11ad20eacd80c962b8527d99b'
'0a960d9cfb84b986136c2645f4ee4eab'
'cbf3c0c062055861c8e2d82105afcc33'
'64521a6620ba82895411c450d4ab639c')
build() {
cd ${srcdir}/cytoscape-unix-${pkgver}
./gen_vmoptions.sh
}
package() {
install -d ${pkgdir}/opt/cytoscape
install -d ${pkgdir}/opt/cytoscape/framework/instances
install -d ${pkgdir}/usr/share/{applications,pixmaps}
install -d ${pkgdir}/usr/bin
cd ${startdir}/
cp -r ${srcdir}/cytoscape-unix-${pkgver}/* ${pkgdir}/opt/cytoscape
chmod 755 ${pkgdir}/opt/cytoscape/cytoscape.sh
install -D -m755 cytoscape ${pkgdir}/usr/bin/
install -D -m644 cytoscape.png ${pkgdir}/usr/share/pixmaps
install -D -m644 cytoscape.desktop ${pkgdir}/usr/share/applications
}
# vim:set ts=2 sw=2 et:
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