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# Maintainer: Bipin Kumar <kbipinkumar@pm.me>
# shellcheck disable=2034
# shellcheck disable=2148
pkgname=diamond
pkgver=2.1.8
pkgrel=1
pkgdesc="High performance sequence aligner for protein and translated DNA searches with big sequence data. https://doi.org/10.1038/s41592-021-01101-x"
arch=('x86_64')
url="https://github.com/bbuchfink/diamond"
license=('GPL3')
depends=('gcc-libs' 'zlib' 'zstd' 'blast+' 'glibc')
makedepends=('cmake')
source=("$pkgname-$pkgver.tar.gz::https://github.com/bbuchfink/diamond/archive/v$pkgver.tar.gz")
sha256sums=('b6088259f2bc92d1f9dc4add44590cff68321bcbf91eefbc295a3525118b9415')
build() {
cd $pkgname-$pkgver
cmake -B build \
-DCMAKE_INSTALL_PREFIX=/usr \
-DCMAKE_BUILD_TYPE=Release \
-DWITH_ZSTD=ON \
-DBLAST_INCLUDE_DIR=/usr/include/ncbi-tools++ \
-DBLAST_LIBRARY_DIR=/usr/lib/ \
-DZSTD_LIBRARY=/usr/lib/libzstd.so \
-DZLIB_INCLUDE_DIR=/usr/include \
-Wno-dev
cmake --build build
}
check() {
cd $pkgname-$pkgver
ctest --test-dir build --output-on-failure
}
package() {
cd $pkgname-$pkgver
DESTDIR="$pkgdir" cmake --install build
}
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