PKGBUILD


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# Maintainer: Bipin Kumar <bipin@ccmb.res.in>
# shellcheck disable=2034
# shellcheck disable=2148

pkgname=diamond
pkgver=2.1.2
pkgrel=1
pkgdesc="High performance sequence aligner for protein and translated DNA searches with big sequence data. https://doi.org/10.1038/s41592-021-01101-x"
arch=('x86_64')
url="https://github.com/bbuchfink/diamond"
license=('GPL3')
depends=('gcc-libs' 'zlib' 'zstd' 'blast+')
makedepends=('cmake')
source=("$pkgname-$pkgver.tar.gz::https://github.com/bbuchfink/diamond/archive/v$pkgver.tar.gz")
sha256sums=('90dcc4455b88d3f9df155ffd7fb9e433e68af8b6740e2820d04cf962f4ef9d05')

build() {
  cd $pkgname-$pkgver
  cmake -B build \
    -DCMAKE_INSTALL_PREFIX=/usr \
    -DCMAKE_BUILD_TYPE=Release \
    -DWITH_ZSTD=ON \
    -DBLAST_INCLUDE_DIR=/usr/include/ncbi-tools++ \
    -DBLAST_LIBRARY_DIR=/usr/lib/ \
    -DZSTD_LIBRARY=/usr/lib/libzstd.so \
    -DZLIB_INCLUDE_DIR=/usr/include \
    -Wno-dev

  cmake --build build
}

package() {
  cd $pkgname-$pkgver
  DESTDIR="$pkgdir" cmake --install build
}