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# Maintainer: Hector Mtz-Seara <hseara at gmail dot com>
pkgname=dssp
pkgver=3.0.0
pkgrel=3
pkgdesc="Secondary structure assignment for proteins"
arch=('i686' 'x86_64')
url="http://swift.cmbi.ru.nl/gv/dssp/HTML/distrib.html"
license=('custom')
depends=('boost-libs')
makedepends=('boost')
source=("$pkgname-$pkgver.tar.gz::ftp://ftp.cmbi.ru.nl/pub/software/$pkgname/$pkgname-$pkgver.tgz")
sha1sums=('4b35bc8e7d9f62262b00b918d5b194fbdd65ffaa')
prepare() {
cd "$srcdir/$pkgname-$pkgver"
sed -i 's/-static//' makefile
sed -i 's:<boost/tr1/tuple.hpp>:<boost/tuple/tuple.hpp>:' ./src/mas.cpp
sed -i 's/tr1::tuple/boost::tuple/' ./src/mas.cpp
sed -i 's:<boost/tr1/tuple.hpp>:<boost/tuple/tuple.hpp>:' ./src/primitives-3d.h
sed -i 's/std::tr1::tuple/boost::tuple/' ./src/primitives-3d.h
sed -i 's/std::tr1::tuple/boost::tuple/' ./src/primitives-3d.cpp
sed -i 's/std::tr1::tuple/boost::tuple/' ./src/structure.h
sed -i 's/std::tr1::tuple/boost::tuple/' ./src/structure.cpp
sed -i 's/std::tr1::tie/boost::tie/' ./src/dssp.cpp
sed -i 's/std::tr1::make_tuple/boost::make_tuple/' ./src/structure.cpp
sed -i 's/std::tr1::make_tuple/boost::make_tuple/' ./src/primitives-3d.cpp
}
build() {
cd "$srcdir/$pkgname-$pkgver"
make
sed -i 's:$(DEST_DIR)/man/man1:$(DEST_DIR)/share/man/man1/:' makefile
}
package() {
cd "$srcdir/$pkgname-$pkgver"
make DEST_DIR="${pkgdir}/usr" install
install -D -m0644 LICENSE_1_0.txt "$pkgdir/usr/share/licenses/dssp/LICENSE"
}
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