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# Maintainer of this PKBGUILD file: Martino Pilia <martino.pilia@gmail.com>
pkgname=elastix
pkgver=4.9.0
pkgrel=5
pkgdesc='Toolbox for rigid and nonrigid registration of images'
arch=('x86_64')
url='http://elastix.isi.uu.nl/'
license=('apache')
provides=()
depends=('insight-toolkit>=4.13' 'ann')
makedepends=('cmake')
optdepends=()
conflicts=('elastix-git' 'elastix-bin')
source=("https://github.com/SuperElastix/elastix/archive/${pkgver}.tar.gz")
sha512sums=('5380529a27d9aef4d93147c6de3cb0930fd31851106cfb41f35556b6e6a5406058de60bdb6ec699f17631861fd518f370b0f0a170db5d254eeafb529283d618c')
prepare() {
_build_dir="${srcdir}/${pkgname}-${pkgver}/build"
mkdir "$_build_dir" || :
cd "$_build_dir"
cmake \
-DCMAKE_INSTALL_PREFIX:PATH="/usr" \
-DCMAKE_BUILD_TYPE:STRING=Release \
-DCMAKE_CXX_FLAGS:STRING="--std=c++11" \
-DBUILD_TESTING:BOOL=OFF \
-DBUILD_SHARED_LIBS:BOOL=ON \
-DELASTIX_IMAGE_2D_PIXELTYPES:STRING="unsigned char;short;float" \
-DELASTIX_IMAGE_3D_PIXELTYPES:STRING="unsigned char;short;float" \
-DELASTIX_IMAGE_4D_PIXELTYPES:STRING="unsigned char;short;float" \
-DELASTIX_BUILD_EXECUTABLE:BOOL=ON \
-DELASTIX_USE_OPENCL:BOOL=OFF \
-DELASTIX_USE_OPENMP:BOOL=ON \
-DELASTIX_USE_EIGEN:BOOL=OFF \
-DUSE_ALL_COMPONENTS:BOOL=OFF \
-DUSE_AdaptiveStochasticGradientDescent:BOOL=ON \
-DUSE_AdvancedAffineTransformElastix:BOOL=ON \
-DUSE_AdvancedBSplineTransform:BOOL=ON \
-DUSE_AdvancedKappaStatisticMetric:BOOL=ON \
-DUSE_AdvancedMattesMutualInformationMetric:BOOL=ON \
-DUSE_AdvancedMeanSquaresMetric:BOOL=ON \
-DUSE_AdvancedNormalizedCorrelationMetric:BOOL=ON \
-DUSE_AffineDTITransformElastix:BOOL=ON \
-DUSE_AffineLogTransformElastix:BOOL=OFF \
-DUSE_BSplineInterpolator:BOOL=ON \
-DUSE_BSplineInterpolatorFloat:BOOL=ON \
-DUSE_BSplineResampleInterpolator:BOOL=ON \
-DUSE_BSplineResampleInterpolatorFloat:BOOL=ON \
-DUSE_BSplineStackTransform:BOOL=ON \
-DUSE_BSplineTransformWithDiffusion:BOOL=ON \
-DUSE_CMAEvolutionStrategy:BOOL=ON \
-DUSE_ConjugateGradient:BOOL=ON \
-DUSE_ConjugateGradientFRPR:BOOL=ON \
-DUSE_CorrespondingPointsEuclideanDistanceMetric:BOOL=ON \
-DUSE_DeformationFieldTransform:BOOL=ON \
-DUSE_DisplacementMagnitudePenalty:BOOL=ON \
-DUSE_DistancePreservingRigidityPenalty:BOOL=ON \
-DUSE_EulerTransformElastix:BOOL=ON \
-DUSE_FiniteDifferenceGradientDescent:BOOL=ON \
-DUSE_FixedGenericPyramid:BOOL=ON \
-DUSE_FixedRecursivePyramid:BOOL=ON \
-DUSE_FixedShrinkingPyramid:BOOL=ON \
-DUSE_FixedSmoothingPyramid:BOOL=ON \
-DUSE_FullSampler:BOOL=ON \
-DUSE_FullSearch:BOOL=ON \
-DUSE_GradientDifferenceMetric:BOOL=ON \
-DUSE_GridSampler:BOOL=ON \
-DUSE_KNNGraphAlphaMutualInformationMetric:BOOL=OFF \
-DUSE_LinearInterpolator:BOOL=ON \
-DUSE_LinearResampleInterpolator:BOOL=ON \
-DUSE_MissingStructurePenalty:BOOL=ON \
-DUSE_MovingRecursivePyramid:BOOL=ON \
-DUSE_MovingShrinkingPyramid:BOOL=ON \
-DUSE_MovingSmoothingPyramid:BOOL=ON \
-DUSE_MultiBSplineTransformWithNormal:BOOL=ON \
-DUSE_MultiInputRandomCoordinateSampler:BOOL=ON \
-DUSE_MultiMetricMultiResolutionRegistration:BOOL=ON \
-DUSE_MultiResolutionRegistration:BOOL=ON \
-DUSE_MultiResolutionRegistrationWithFeatures:BOOL=ON \
-DUSE_MutualInformationHistogramMetric:BOOL=ON \
-DUSE_MyStandardResampler:BOOL=ON \
-DUSE_NearestNeighborInterpolator:BOOL=ON \
-DUSE_NearestNeighborResampleInterpolator:BOOL=ON \
-DUSE_NormalizedGradientCorrelationMetric:BOOL=ON \
-DUSE_NormalizedMutualInformationMetric:BOOL=ON \
-DUSE_OpenCLFixedGenericPyramid:BOOL=OFF \
-DUSE_OpenCLMovingGenericPyramid:BOOL=OFF \
-DUSE_OpenCLResampler:BOOL=OFF \
-DUSE_PatternIntensityMetric:BOOL=ON \
-DUSE_PolydataDummyPenalty:BOOL=ON \
-DUSE_Powell:BOOL=ON \
-DUSE_QuasiNewtonLBFGS:BOOL=ON \
-DUSE_RSGDEachParameterApart:BOOL=ON \
-DUSE_RandomCoordinateSampler:BOOL=ON \
-DUSE_RandomSampler:BOOL=ON \
-DUSE_RandomSamplerSparseMask:BOOL=ON \
-DUSE_RayCastInterpolator:BOOL=ON \
-DUSE_RayCastResampleInterpolator:BOOL=ON \
-DUSE_ReducedDimensionBSplineInterpolator:BOOL=ON \
-DUSE_ReducedDimensionBSplineResampleInterpolator:BOOL=ON \
-DUSE_RegularStepGradientDescent:BOOL=ON \
-DUSE_SimilarityTransformElastix:BOOL=ON \
-DUSE_Simplex:BOOL=ON \
-DUSE_SimultaneousPerturbation:BOOL=ON \
-DUSE_SplineKernelTransform:BOOL=ON \
-DUSE_StandardGradientDescent:BOOL=ON \
-DUSE_StatisticalShapePenalty:BOOL=ON \
-DUSE_TransformBendingEnergyPenalty:BOOL=ON \
-DUSE_TransformRigidityPenalty:BOOL=ON \
-DUSE_TranslationTransformElastix:BOOL=ON \
-DUSE_VarianceOverLastDimensionMetric:BOOL=ON \
-DUSE_ViolaWellsMutualInformationMetric:BOOL=ON \
-DUSE_WeightedCombinationTransformElastix:BOOL=ON \
..
}
build() {
cd "$_build_dir"
make
}
package() {
cd "${srcdir}/${pkgname}-${pkgver}/build"
make install DESTDIR="${pkgdir}"
cd ..
install -D -m644 \
"LICENSE" \
"$pkgdir/usr/share/licenses/$pkgname/LICENSE"
install -D -m644 \
"NOTICE" \
"$pkgdir/usr/share/licenses/$pkgname/NOTICE"
}
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