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# Maintainer: Michael Schubert <mschu.dev at gmail>
# Contributor: moostik <mooostik_at_gmail.com>
# Contributor: mick elliot <micke@sfu.ca>
pkgname=emboss
_pkgname=EMBOSS
pkgver=6.6.0
pkgrel=1
pkgdesc="A collection of molecular biology applications"
arch=('x86_64' 'i686')
url="http://emboss.sourceforge.net/"
depends=('gd' 'pcre' 'java-runtime')
optdepends=('libmysqlclient' 'postgresql-libs')
options=('!libtool')
license=('GPL2')
source=("http://debian.rub.de/ubuntu/pool/universe/e/emboss/emboss_$pkgver.orig.tar.gz")
md5sums=('cc3fca80cb0618deb10fa0d29fe90e4b')
build() {
cd "$srcdir/$_pkgname-$pkgver"
./configure --prefix=/usr --enable-large --with-x
sed -i 's|$(bindir)/embossupdate|:|' Makefile
JAVA_CFLAGS="-I$JAVA_HOME/include -I$JAVA_HOME/include/linux" make
}
package() {
cd "$srcdir/$_pkgname-$pkgver"
make DESTDIR="$pkgdir" install
rm -f "$pkgdir/usr/include/{pcre,pcreposix}.h"
}
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