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# Maintainer: Tobias Bachmann <tobachmann@gmx.de>
pkgname=fsl-palm
pkgver=alpha116
pkgrel=1
pkgdesc="PALM is a set of GNU Octave/MATLAB scripts to perform Permutation Analysis for Linear Models"
arch=('any')
url="https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/PALM"
license=('GPL')
depends=('octave')
optdepends=('octave-image: needed for spatial statistics (you will most likely want this)'
'fsl: support for additional image formats, e.g. compressed NIfTI files'
'freesurfer-bin: support to read/write FreeSurfer files directly')
source=("https://s3-us-west-2.amazonaws.com/andersonwinkler/palm/${pkgname##fsl-}-${pkgver}.tar.gz"
"001-adjust_path_for_systemwide_install.patch")
sha256sums=('83429e3bd670212e05622767ecd48fc0cbf4383d2294d408ce79fb4933d9d576'
'5722799901bc23ca1f391418d6e9d20e92ecce89612cd6e0185cffd51d06bff2')
prepare() {
cd "${srcdir}"/${pkgname##fsl-}-${pkgver}
patch -Np1 -i "${srcdir}"/001-adjust_path_for_systemwide_install.patch
}
build() {
# We need to rebuild .mex files due to newer Octave version on Arch
cd "${srcdir}"
for sourcefile in $(find . -type f -name '*.c'); do
outfile=${sourcefile//.c/.mex}
rm "${outfile}" # Unneccessary, just for clarity purposes
/usr/bin/mkoctfile -v --mex "${sourcefile}" -o "${outfile}"
done
}
package() {
mkdir -p "${pkgdir}"/usr/lib
mkdir "${pkgdir}"/usr/bin
mv "${srcdir}"/${pkgname##fsl-}-${pkgver}/palm "${pkgdir}"/usr/bin/palm
cp --recursive --preserve=mode "${srcdir}"/${pkgname##fsl-}-${pkgver} "${pkgdir}"/usr/lib/palm
}
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