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# Maintainer: Martin Diehl <aur@martin-diehl.net>
# Contributor: Ronald van Haren <ronald.archlinux.org>
# Contributor: Bruno Pagani <archange@archlinux.org>
# Contributor: George Eleftheriou <eleftg>
# Contributor: Stefan Husmann <stefan-husmann@t-online.de>
# Contributor: damir <damir@archlinux.org>
# Contributor: Tom K <tomk@runbox.com>
# Contributor: Jed Brown <jed@59A2.org>
# Contributor: Simone Pezzuto <junki.gnu@gmail.com>
_pkgname=hdf5
_mpi=openmpi
pkgname=${_pkgname}-${_mpi}-java
pkgver=1.12.0
pkgrel=2
pkgdesc="General purpose library and file format for storing scientific data (${_mpi} version including Java Native Interfaces)"
arch=(x86_64)
url="https://www.hdfgroup.org/hdf5"
license=(custom)
depends=(zlib libaec bash ${_mpi})
makedepends=(cmake time gcc-fortran java-environment)
provides=(hdf5-${_mpi} hdf5-java)
conflicts=(hdf5)
replaces=(hdf5-fortran-${_mpi})
options=(staticlibs)
source=("https://support.hdfgroup.org/ftp/HDF5/releases/${_pkgname}-${pkgver:0:4}/${_pkgname}-${pkgver/_/-}/src/${_pkgname}-${pkgver/_/-}.tar.bz2"
hdf5-1.12.0-compat-1.6.patch)
sha256sums=('97906268640a6e9ce0cde703d5a71c9ac3092eded729591279bf2e3ca9765f61'
'72ad497c56760bb3af8193c88d3fa264125829850b843697de55d934c56f7f44')
build() {
# Crazy workaround: run CMake to generate pkg-config file
mkdir -p build && cd build
CXX="mpicxx" \
CC="mpicc" \
FC="mpif90" \
F9X="mpif90" \
RUNPARALLEL="mpirun" \
OMPI_MCA_disable_memory_allocator=1 \
cmake ../${_pkgname}-${pkgver/_/-} \
-DCMAKE_INSTALL_PREFIX=/usr \
-DBUILD_SHARED_LIBS=ON \
-DCMAKE_BUILD_TYPE=Release \
-DALLOW_UNSUPPORTED=ON \
-DHDF5_BUILD_HL_LIB=ON \
-DHDF5_BUILD_CPP_LIB=ON \
-DHDF5_BUILD_FORTRAN=ON \
-DHDF5_BUILD_JAVA=ON \
-DHDF5_ENABLE_PARALLEL=ON \
-DHDF5_ENABLE_Z_LIB_SUPPORT=ON \
-DHDF5_ENABLE_SZIP_SUPPORT=ON \
-DHDF5_ENABLE_SZIP_ENCODING=ON
# But don’t build with it, it’s quite broken
cd ../${_pkgname}-${pkgver/_/-}
./configure \
CXX="mpicxx" \
CC="mpicc" \
FC="mpif90" \
F9X="mpif90" \
RUNPARALLEL="mpirun" \
OMPI_MCA_disable_memory_allocator=1 \
--prefix=/usr \
--docdir=/usr/share/doc/hdf5/ \
--with-examplesdir='${DESTDIR}/${prefix}/share/doc/hdf5/examples' \
--enable-static \
--disable-sharedlib-rpath \
--enable-build-mode=production \
--enable-hl \
--enable-cxx \
--enable-fortran \
--enable-java \
--enable-parallel \
--enable-unsupported \
--with-pic \
--with-zlib \
--with-szlib
make
}
check() {
cd ${_pkgname}-${pkgver/_/-}
# Without this, checks are failing with messages like “error while loading shared libraries: libhdf5.so.101: cannot open shared object file: No such file or directory”
export LD_LIBRARY_PATH="${srcdir}"/${pkgname}-${pkgver/_/-}/src/.libs/
export LD_LIBRARY_PATH="$LD_LIBRARY_PATH":"${srcdir}"/${pkgname}-${pkgver/_/-}/c++/src/.libs/
export LD_LIBRARY_PATH="$LD_LIBRARY_PATH":"${srcdir}"/${pkgname}-${pkgver/_/-}/fortran/src/.libs/
export LD_LIBRARY_PATH="$LD_LIBRARY_PATH":"${srcdir}"/${pkgname}-${pkgver/_/-}/hl/src/.libs/
export LD_LIBRARY_PATH="$LD_LIBRARY_PATH":"${srcdir}"/${pkgname}-${pkgver/_/-}/hl/c++/src/.libs/
export LD_LIBRARY_PATH="$LD_LIBRARY_PATH":"${srcdir}"/${pkgname}-${pkgver/_/-}/hl/fortran/src/.libs/
# This is a parallel build, they are always OpenMPI bugs
make check || echo "Tests failed"
}
package() {
cd ${_pkgname}-${pkgver/_/-}
make DESTDIR="${pkgdir}" install
install -Dm644 COPYING -t "${pkgdir}"/usr/share/licenses/${_pkgname}
# Install pkg-config files from CMake tree
install -Dm644 ../build/CMakeFiles/hdf5{,_hl}{,_cpp}-${pkgver}.pc -t "${pkgdir}"/usr/lib/pkgconfig/
# Fix 1.6 compatibility for h5py
cd "${pkgdir}"/usr/include/
patch -p1 -i "${srcdir}"/hdf5-1.12.0-compat-1.6.patch
}
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