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# $Id$
# Maintainer : George Eleftheriou <eleftg>
# Contributor: Ronald van Haren <ronald.archlinux.org>
# Contributor: Bruno Pagani (a.k.a. ArchangeGabriel) <archange@archlinux.org>
# Contributor: Stefan Husmann <stefan-husmann@t-online.de>
# Contributor: damir <damir@archlinux.org>
# Contributor: Tom K <tomk@runbox.com>
# Contributor: Jed Brown <jed@59A2.org>
# Contributor: Simone Pezzuto <junki.gnu@gmail.com>
_pkgname=hdf5
_mpi=openmpi
pkgname=${_pkgname}-${_mpi}-java
pkgver=1.10.2
pkgrel=1
pkgdesc="General purpose library and file format for storing scientific data (${_mpi} version) (full version including its Java Native Interfaces)"
arch=('x86_64')
url="https://www.hdfgroup.org/HDF5/"
license=('custom')
depends=('zlib' 'libaec' 'bash' 'openmpi')
makedepends=('time' 'gcc-fortran' 'java-environment')
provides=('hdf5-openmpi' 'hdf5' 'hdf5-cpp-fortran' "hdf5-fortran-${_mpi}")
conflicts=('hdf5' 'hdf5-openmpi')
replaces=("hdf5-fortran-${_mpi}")
source=("https://support.hdfgroup.org/ftp/HDF5/releases/${_pkgname}-${pkgver:0:4}/${_pkgname}-${pkgver/_/-}/src/${_pkgname}-${pkgver/_/-}.tar.bz2"
'mpi.patch')
md5sums=('41fb9347801b546fba323523a1c1af51'
'dfa8dd50b8a7ebb3ad7249c627156cf9')
prepare() {
cd ${_pkgname}-${pkgver/_/-}
# Fix building with GCC 8.1
sed 's/\(.*\)(void) HDF_NO_UBSAN/HDF_NO_UBSAN \1(void)/' -i src/H5detect.c
# FS#33343
patch -p1 -i ../mpi.patch
}
build() {
cd ${_pkgname}-${pkgver/_/-}
./configure \
CXX="mpicxx" \
CC="mpicc" \
FC="mpif90" \
F9X="mpif90" \
RUNPARALLEL="mpirun" \
OMPI_MCA_disable_memory_allocator=1 \
--prefix=/usr \
--docdir=/usr/share/doc/hdf5 \
--disable-static \
--disable-sharedlib-rpath \
--enable-build-mode=production \
--enable-hl \
--enable-cxx \
--enable-fortran \
--enable-fortran2003 \
--enable-java \
--enable-parallel \
--enable-unsupported \
--with-pic \
--with-zlib \
--with-szlib
make
}
check() {
cd ${_pkgname}-${pkgver/_/-}
# Without exporting LD_LIBRARY_PATH, tests fail being unable to
# locate the newly built (not installed yet) hdf5 runtime
export LD_LIBRARY_PATH="${srcdir}"/${pkgname}-${pkgver/_/-}/src/.libs/
export LD_LIBRARY_PATH="$LD_LIBRARY_PATH":"${srcdir}"/${pkgname}-${pkgver/_/-}/c++/src/.libs/
export LD_LIBRARY_PATH="$LD_LIBRARY_PATH":"${srcdir}"/${pkgname}-${pkgver/_/-}/fortran/src/.libs/
export LD_LIBRARY_PATH="$LD_LIBRARY_PATH":"${srcdir}"/${pkgname}-${pkgver/_/-}/hl/src/.libs/
export LD_LIBRARY_PATH="$LD_LIBRARY_PATH":"${srcdir}"/${pkgname}-${pkgver/_/-}/hl/c++/src/.libs/
export LD_LIBRARY_PATH="$LD_LIBRARY_PATH":"${srcdir}"/${pkgname}-${pkgver/_/-}/hl/fortran/src/.libs/
# This is a parallel build, there will always be some OpenMPI bugs,
# so skip failures and don't kill the entire packaging process
make check || warning "Some tests failed"
}
package() {
cd ${_pkgname}-${pkgver/_/-}
make -j1 DESTDIR="${pkgdir}" install
install -dm755 "${pkgdir}"/usr/share/doc/${_pkgname}
mv "${pkgdir}"/usr/share/{hdf5_examples,doc/${_pkgname}/examples}
install -Dm644 COPYING "${pkgdir}"/usr/share/licenses/${_pkgname}/LICENSE
}
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