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# Maintainer: Alexander Peltzer ("alexpe87") <alexpe.aur@mailbox.org>
# Former Maintainer (thanks man!) : Christian Krause ("wookietreiber") <christian.krause@mailbox.org>
pkgname=htslib
pkgver=1.9
pkgrel=1
pkgdesc="library for high-throughput sequencing data formats"
arch=('i686' 'x86_64')
url="https://github.com/samtools/htslib"
license=('custom')
depends=('bzip2' 'curl' 'xz')
provides=('tabix')
replaces=('tabix')
conflicts=('tabix')
source=(https://github.com/samtools/htslib/releases/download/$pkgver/$pkgname-$pkgver.tar.bz2)
build() {
cd $srcdir/$pkgname-$pkgver
./configure \
--prefix=/usr \
--enable-libcurl \
--enable-plugins \
--with-plugin-dir=/usr/lib/htslib/plugins
make
}
check() {
cd $srcdir/$pkgname-$pkgver
make check
}
package() {
cd $srcdir/$pkgname-$pkgver
make DESTDIR=$pkgdir install
install -Dm644 LICENSE $pkgdir/usr/share/licenses/$pkgname/LICENSE
# htslib shared library comes installed as 0644
chmod +x $pkgdir/usr/lib/libhts.so.*.*
}
md5sums=('2ac92c9c3eef9986345ac69a05dd4d24')
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