PKGBUILD


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# Contributor: Decrypted Epsilon <decrypted.epsilon@gmail.com>
# Maintainer: Stefan Husmann <stefan-husmann@t-online.de>

pkgname=igv
pkgver=2.3.79
pkgrel=1
pkgdesc="High-performance visualization tool for interactive exploration of large, integrated genomic datasets."
arch=('any')
url="http://www.broadinstitute.org/software/igv/home"
license=('LGPL')
depends=('java-environment' 'sh')
source=("http://www.broadinstitute.org/igv/projects/downloads/IGV_$pkgver.zip" \
	"http://www.broadinstitute.org/software/igv/sites/cancerinformatics.org.igv/files/images/tools.png" \
  "$pkgname.sh" "$pkgname.desktop")
md5sums=('5b2920d0134ca504345001a42f5169e5'
         '1ddfce893f771898089feb7c0d7ac43e'
         'aadbfd7b2e4bb2cea2ddd6025ec42688'
         '5cee93f9e85a7a37d8b5afdedbe12f14')

package() {    
  install -Dm755 $pkgname.sh "$pkgdir/usr/bin/$pkgname"
  install -Dm644 tools.png "$pkgdir/usr/share/pixmaps/$pkgname.png"
  install -Dm644 $pkgname.desktop "$pkgdir/usr/share/applications/$pkgname.desktop"  
  cd "$srcdir/IGV_$pkgver"
  install -Dm644 $pkgname.jar "$pkgdir/usr/share/java/$pkgname/$pkgname.jar"  
  install -Dm644 batik-codec__V1.7.jar \
    "$pkgdir/usr/share/java/$pkgname/batik-codec__V1.7.jar"  
  install -Dm644 goby-io-igv__V1.0.jar \
    "$pkgdir/usr/share/java/$pkgname/goby-io-igv__V1.0.jar"
}