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# Maintainer: Rongbo <wurongbo2012@hotmail.com>
pkgname=igv-web
_pkgname=igv
pkgver=2.4.10
pkgrel=1
pkgdesc='A web application for exploring genomic datasets using igv.js'
arch=('any')
url='https://igv.org/doc/webapp/'
license=('MIT')
keywords=('bioinformatics')
depends=('nginx')
makedepends=('npm')
backup=("etc/nginx/conf.d/${pkgname}.conf")
source=("https://igv.org/app-archive/igv-webapp.${pkgver}.zip"
"igv-web.patch"
"igv-web.conf"
"igvwebConfig.patch"
)
sha256sums=('2ef14c7ccce0f1307c48d8a14a05733a030e534ef3682fede2a7588caa48440f'
'b131c27b138880a92dd24fa4c4c1c99161ab2ff1ab268fa8f1637a585e7c40e2'
'813c375ee0c763d38b66ea589dd9340b4f2c7ff8b969ab57ec13870cc0348a56'
'2b0c9a51f42ae36ac7c50a01e7f923440fa56f9f63c14134d46ee497e6281fd9')
options=('!debug' '!strip')
prepare() {
patch igv-webapp.${pkgver}/index.html -i ${pkgname}.patch
patch igv-webapp.${pkgver}/igvwebConfig.js -i igvwebConfig.patch
mkdir -p igv-webapp.${pkgver}/node_modules
}
build() {
cd igv-webapp.${pkgver}
npm install bootstrap@5.3.3 \
bootstrap-icons \
jquery@3.5.1 \
datatables.net-select-dt@1.3.1 \
react-dom@16.14.0 \
@jbrowse/react-circular-genome-view@1.7
echo "you can customize igvwebConfig.js in /srv/http/${pkgname}"
}
package() {
install -Dm644 ${pkgname}.conf ${pkgdir}/etc/nginx/conf.d/${pkgname}.conf
install -dm755 ${pkgdir}/srv/http
cp -r ${srcdir}/igv-webapp.${pkgver} ${pkgdir}/srv/http/${pkgname}
echo "you should include conf.d/ in /etc/nginx/nginx.conf http block"
}
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