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# Maintainer: Butui Hu <hot123tea123@gmail.com>
_pkgname=ITK
pkgname=(itk-git python-itk-git)
_pkgver=5.4.4
pkgver=5.4.4.r57454.4baa61f33a
pkgrel=2
pkgdesc="An open-source toolkit for multidimensional image analysis"
arch=(x86_64)
url="https://www.itk.org"
license=(Apache-2.0)
makedepends=(
castxml
clang
cmake
eigen
git # used for fetching remote modules
lld
ninja
python
swig
# fftw is needed only for detection by cmake, ITK links to static libs from MKL
fftw
intel-oneapi-mkl
# depends
dcmtk
double-conversion
expat
gdcm
hdf5
libjpeg-turbo
libpng
libtiff
zlib
)
options=(!emptydirs)
source=("${_pkgname}::git+https://github.com/InsightSoftwareConsortium/ITK.git")
sha512sums=('SKIP')
_pick() {
local p="$1" f d; shift
for f; do
d="$srcdir/$p/${f#$pkgdir/}"
mkdir -p "$(dirname "$d")"
mv "$f" "$d"
rmdir -p --ignore-fail-on-non-empty "$(dirname "$f")"
done
}
pkgver() {
cd "${_pkgname}"
printf "%s.r%s.%s" "${_pkgver}" "$(git rev-list --count HEAD)" "$(git rev-parse --short HEAD)"
}
prepare() {
# quick fix for simpleitkfilter module
sed -i "s/d13acf7ae2d6056d66477de15edd641ba3b23ce9/526d6c1140d76f2e5e198ff467371c2d74dc25eb/" "${srcdir}/${_pkgname}/Modules/Remote/SimpleITKFilters.remote.cmake"
}
build() {
local cmake_options=(
-B build
-S "${srcdir}/${_pkgname}"
-G Ninja
-W no-dev
-DBUILD_SHARED_LIBS=ON
-DBUILD_TESTING=OFF
-DCMAKE_BUILD_TYPE=None
-DCMAKE_CXX_COMPILER=clang++
-DCMAKE_C_COMPILER=clang
-DCMAKE_LINKER_TYPE=LLD
-DCMAKE_INSTALL_PREFIX=/usr
-DCMAKE_SKIP_INSTALL_RPATH=ON
-DCMAKE_SKIP_RPATH=ON
-DITK_BUILD_DEFAULT_MODULES=ON
-DITK_USE_GPU=OFF
-DITK_USE_MKL=ON
-DITK_USE_SYSTEM_CASTXML=ON
-DITK_USE_SYSTEM_DCMTK=ON
-DITK_USE_SYSTEM_DOUBLECONVERSION=ON
-DITK_USE_SYSTEM_EIGEN=ON
-DITK_USE_SYSTEM_EXPAT=ON
-DITK_USE_SYSTEM_FFTW=ON
-DITK_USE_SYSTEM_GDCM=ON
-DITK_USE_SYSTEM_GOOGLETEST=OFF
-DITK_USE_SYSTEM_HDF5=ON
-DITK_USE_SYSTEM_JPEG=ON
-DITK_USE_SYSTEM_MINC=OFF
-DITK_USE_SYSTEM_PNG=ON
-DITK_USE_SYSTEM_SWIG=ON
-DITK_USE_SYSTEM_TIFF=ON
-DITK_USE_SYSTEM_VXL=OFF # not packaged
-DITK_USE_SYSTEM_ZLIB=ON
-DITK_WRAP_IMAGE_DIMS="2;3;4"
-DITK_WRAP_PYTHON=ON
# Swig does not work with Python's limited API
-DITK_USE_PYTHON_LIMITED_API=OFF
-DITK_WRAP_complex_double=ON
-DITK_WRAP_complex_float=ON
-DITK_WRAP_covariant_vector_double=ON
-DITK_WRAP_covariant_vector_float=ON
-DITK_WRAP_double=ON
-DITK_WRAP_float=ON
-DITK_WRAP_rgb_unsigned_char=ON
-DITK_WRAP_rgb_unsigned_short=ON
-DITK_WRAP_rgba_unsigned_char=ON
-DITK_WRAP_rgba_unsigned_short=ON
-DITK_WRAP_signed_char=ON
-DITK_WRAP_signed_long_long=ON
-DITK_WRAP_signed_short=ON
-DITK_WRAP_unsigned_char=ON
-DITK_WRAP_unsigned_long_long=ON
-DITK_WRAP_unsigned_short=ON
-DITK_WRAP_vector_double=ON
-DModule_GenericLabelInterpolator=ON
-DModule_ITKIODCMTK=ON
-DModule_ITKIOMINC=ON
-DModule_ITKIOTransformMINC=ON
-DModule_ITKReview=ON
-DModule_MorphologicalContourInterpolation=ON
-DModule_SimpleITKFilters=ON
# add more modules comparing to itk from extra repo
-DModule_AdaptiveDenoising=ON
-DModule_GenericLabelInterpolator=ON
-DModule_GrowCut=ON
-DModule_IOScanco=ON
-DModule_ITKIODCMTK=ON
-DModule_MGHIO=ON
)
cmake "${cmake_options[@]}"
cmake --build build
}
package_itk-git() {
depends=(
dcmtk
double-conversion
expat libexpat.so
gcc-libs
gdcm libgdcmCommon.so libgdcmDICT.so libgdcmDSED.so libgdcmMSFF.so
glibc
hdf5
libjpeg-turbo libjpeg.so
libpng libpng16.so
libtiff libtiff.so
zlib libz.so
)
provides=(itk=${_pkgver})
conflicts=(itk)
DESTDIR="$pkgdir" cmake --install build
(
cd "$pkgdir"
site_packages=$(python -c "import site; print(site.getsitepackages()[0])")
_pick python-itk-git "${site_packages#/}"
)
}
package_python-itk-git() {
pkgdesc+=" - Python bindings"
depends=(
itk
python
python-numpy
python-xarray
)
provides=(python-itk=${_pkgver})
conflicts=(python-itk)
mv -v $pkgname/* "$pkgdir"
python -O -m compileall "$pkgdir"/usr/lib
}
# vim:set ts=2 sw=2 et:
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