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# Maintainer: Clint Valentine <valentine.clint@gmail.com>
pkgname=kraken
pkgver=0.10.5
pkgrel=1
pkgdesc="Kraken taxonomic sequence classification system"
arch=('i686' 'x86_64')
url=https://github.com/DerrickWood/"${kraken}"
license=('GPL3')
depends=('coreutils' 'perl')
provides=('kraken')
conflicts=('kraken')
source=(https://github.com/DerrickWood/"${pkgname}"/archive/v"${pkgver}"-beta.tar.gz)
md5sums=('0231a7bfc067f564ad28fa91e9f71606')
package() {
cd "${srcdir}"/"${pkgname}"-"${pkgver}"-beta
installation_dir="${pkgdir}"/usr/share/"${pkgname}"-"${pkgver}"-beta
mkdir -p "${installation_dir}"
mkdir -p "${pkgdir}"/usr/bin
mkdir -p "${pkgdir}"/usr/share/licenses
mkdir -p "${pkgdir}"/usr/share/doc
sed -i "s#\$(KRAKEN_DIR)#${installation_dir}#g" src/Makefile
make -C src install
for file in scripts/*; do
sed -i "s|#####=KRAKEN_DIR=#####|${installation_dir}|g" "${file}"
sed -i "s|#####=VERSION=#####|${pkgver}|g" "${file}"
cp "${file}" "${installation_dir}"
done
install -D -m644 LICENSE "${pkgdir}"/usr/share/licenses/"${pkgname}"_v"${pkgver}"/LICENSE
install -D -m644 README.md "${pkgdir}"/usr/share/doc/"${pkgname}"_v"${pkgver}"/README.md
install -D -m644 CHANGELOG "${pkgdir}"/usr/share/doc/"${pkgname}"_v"${pkgver}"/CHANGELOG
for doc in docs/*; do
install -D -m644 "${doc}" "${pkgdir}"/usr/share/doc/"${pkgname}"_v"${pkgver}"/"${doc}"
done
# Soft link primary scripts to /usr/bin.
for file in "${installation_dir}"/kraken-*; do
ln -s "${file}" "${pkgdir}"/usr/bin/$(basename "${file}")
done
ln -s "${installation_dir}"/kraken "${pkgdir}"/usr/bin/kraken
}
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