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# Maintainer: Clint Valentine <valentine.clint@gmail.com>
pkgname=kraken
pkgver=1.1
pkgrel=1
pkgdesc="Kraken taxonomic sequence classification system"
arch=('i686' 'x86_64')
url=https://github.com/DerrickWood/"${pkgname}"
license=('GPL3')
depends=('perl')
optdepends=('jellyfish<=1: for building Kraken databases')
source=("${pkgname}"-"${pkgver}".tar.gz::https://github.com/DerrickWood/"${pkgname}"/archive/v"${pkgver}".tar.gz)
sha256sums=('a4ac74c54c10920f431741c80d8a172670be12c3b352912000030fb5ea4c87a7')
_installation_dir=/usr/share/"${pkgname}"-"${pkgver}"
prepare() {
cd "${srcdir}"/"${pkgname}"-"${pkgver}"
sed -i "s#\$(KRAKEN_DIR)#${pkgdir}${_installation_dir}#g" src/Makefile
make -C src clean
}
build() {
cd "${srcdir}"/"${pkgname}"-"${pkgver}"
make -C src
}
package() {
cd "${srcdir}"/"${pkgname}"-"${pkgver}"
mkdir -p "${pkgdir}""${_installation_dir}"
mkdir -p "${pkgdir}"/usr/bin
mkdir -p "${pkgdir}"/usr/share/licenses
mkdir -p "${pkgdir}"/usr/share/doc
make -C src install
for scripts in scripts/*; do
sed -i "s|#####=KRAKEN_DIR=#####|${_installation_dir}|g" "${scripts}"
sed -i "s|#####=VERSION=#####|${pkgver}|g" "${scripts}"
install -Dm775 "${scripts}" "${pkgdir}""${_installation_dir}"/
done
install -D -m644 LICENSE "${pkgdir}"/usr/share/licenses/"${pkgname}"_v"${pkgver}"/LICENSE
install -D -m644 README.md "${pkgdir}"/usr/share/doc/"${pkgname}"_v"${pkgver}"/README.md
install -D -m644 CHANGELOG "${pkgdir}"/usr/share/doc/"${pkgname}"_v"${pkgver}"/CHANGELOG
for doc in docs/*; do
install -D -m644 "${doc}" "${pkgdir}"/usr/share/doc/"${pkgname}"_v"${pkgver}"/"${doc}"
done
for file in "${pkgdir}${_installation_dir}"/kraken*; do
install -Dm775 "${file}" "${pkgdir}"/usr/bin/$( basename "${file}" )
done
}
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