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# Maintainer: Guoyi Zhang <myname at malacology dot net>
# Contributor: Clint Valentine <valentine.clint@gmail.com>

pkgname=libmaus
pkgver=2.0.813_release_20221210220409
pkgrel=1
pkgdesc="Bioinformatics data structures and algorithms in C++"
arch=('x86_64')
url=https://gitlab.com/german.tischler/libmaus2
license=('GPL-2.0-or-later')
source=(https://gitlab.com/german.tischler/"${pkgname}"2/-/archive/"${pkgver//_/-}"/"${pkgname}"2-"${pkgver//_/-}".tar.gz
	"gcc13.patch::https://gitlab.com/malacology/libmaus2/-/commit/f148c4571d17965192f01a1a25248c3cc3e07da8.patch")
sha256sums=('4125f8daefd6900185675026498369457088e25e81029597659249be49cd5261'
            '3f5a37c3c0a5cf5b0252a278ea434d98bbcf044e09712a0560740275f2555c5f')
makedepends=('make' 'gcc' 'boost')

prepare() {
  cd "${srcdir}"/libmaus2-"${pkgver//_/-}"
  patch -p1 < $srcdir/gcc13.patch
}


build() {
  cd "${srcdir}"/libmaus2-"${pkgver//_/-}"
  ./configure --prefix="${pkgdir}"/usr --exec-prefix "${pkgdir}"/
  make
}

check() {
  cd ${srcdir}/libmaus2-"${pkgver//_/-}"
  make test
}

package() {
  cd ${srcdir}/libmaus2-"${pkgver//_/-}"
  make install
  mv "${pkgdir}"/lib "${pkgdir}"/usr/lib
  install -Dm644 AUTHORS "${pkgdir}"/usr/share/licenses/"${pkgname}"2/AUTHORS
}