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# Contributor: anon at sansorgan.es
pkgname=madagascar
pkgver=4.0.1
pkgrel=2
pkgdesc="Multidimensional data analysis and reproducible computational experiments."
url="https://www.reproducibility.org/wiki/Main_Page"
license=('GPL2')
arch=('i686' 'x86_64')
depends=('libtirpc' 'ffmpeg' 'libxaw' 'cairo' 'fftw' 'netpbm' 'gd' 'scons'
'openmpi' 'glu' 'freeglut' 'suitesparse' 'python-numpy' 'swig' 'cblas' 'plplot')
optdepends=('cuda: GPU acceleration, but not compatible with cuda 12')
makedepends=('scons' 'python')
options=('strip')
source=("$pkgname-$pkgver.tar.gz::https://sourceforge.net/projects/rsf/files/$pkgname/$pkgname-4.0/$pkgname-$pkgver.tar.gz/download")
sha256sums=('91148aabfb27919934651a93d0a33aa90debbd875d615bd20fa92a22001bea4f')
noextract=("$pkgname-$pkgver.tar.gz")
prepare() {
cd "$srcdir"
mkdir -p ${srcdir}/${pkgname}
bsdtar -xf $pkgname-$pkgver.tar.gz --strip-components=1 -C ${srcdir}/${pkgname}
}
build() {
mkdir -p ${srcdir}/${pkgname}
cd ${srcdir}/${pkgname}
export RSFROOT=${pkgdir}/opt/${pkgname}
# fix paths for tirpc in framework/configure.py
sed -i '430,433c\
(plat['\''distro'\''\] == '\''centos'\'' and int(plat['\''version'\''\][0]) >= 8) or \\\
plat['\''distro'\''\] == '\''fedora'\'' or \\\
plat['\''distro'\''\] == '\''arch'\'' or \\\
(plat['\''distro'\''\] == '\''ubuntu'\'' and int(plat['\''version'\''\][:2]) >= 20): \ \
context.env['\''CPPPATH'\''\] = path_get(context,'\''CPPPATH'\'','\''/usr/include/tirpc'\'')' framework/configure.py
# export LINKFLAGS="-llapack -lblas -ltirpc -pthread -fopenmp"
./configure API=c++,f90
# sed -i "s/^LINKFLAGS.*/LINKFLAGS = ['-llapack', '-lblas', '-pthread', '-fopenmp', '-ltirpc']/g" config.py
# make "${MAKEFLAGS}"
make
}
package() {
export RSFROOT=${pkgdir}/opt/${pkgname}
mkdir -p ${RSFROOT}/bin/
export PATH=${RSFROOT}/bin:$PATH
cd ${srcdir}/${pkgname}
make install
cp -r ${srcdir}/${pkgname} ${RSFROOT}/src
chmod a+w ${RSFROOT}/share/madagascar
# add a symlink to rsfcodes in /opt, so that it can be compiled by user
# ln -s ${srcdir}/${pkgname} ${pkgdir}/opt/${pkgname}/rsfcodes
# chmod 755 ${pkgdir}/opt/${pkgname}/rsfcodes
# fix paths in in files
arr[0]="/share/madagascar/etc/config.py"
arr[1]="/share/madagascar/etc/env.sh"
arr[2]="/share/madagascar/etc/env.csh"
python_version=$(ls $RSFROOT/lib | grep python)
arr[3]="/lib/${python_version}/site-packages/rsf/prog.py"
arr[4]="/src/config.py"
arr[5]="/src/env.sh"
arr[6]="/src/env.csh"
echo ${pkgdir}
echo ${srcdir}
for f in ${arr[@]} ; do
sed -i "s|${pkgdir}||g" "${RSFROOT}/$f"
sed -i "s|${srcdir}/${pkgname}|/opt/${pkgname}/src|g" "${RSFROOT}/$f"
done
install install -dm755 "$pkgdir/usr/share/licenses/$pkgname"
install -m644 COPYING.txt "$pkgdir/usr/share/licenses/$pkgname/COPYING.txt"
install -dm755 "$pkgdir/etc/profile.d"
cat > "$pkgdir/etc/profile.d/${pkgname}.sh" << EOF
#!/bin/sh
source /opt/${pkgname}/share/madagascar/etc/env.sh
EOF
cat > "$pkgdir/etc/profile.d/${pkgname}.csh" << EOF
#!/bin/csh
source /opt/${pkgname}/share/madagascar/etc/env.csh
EOF
chmod 755 "$pkgdir/etc/profile.d/${pkgname}"{.sh,.csh}
}
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