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# Contributor: anon at sansorgan.es
# Contributor: Yingchang Liu
pkgname=madagascar-git
pkgver=r15675.c0a0b1a5d
pkgrel=1
pkgdesc="Multidimensional data analysis and reproducible computational experiments."
url="https://www.reproducibility.org/wiki/Main_Page"
license=('GPL2')
arch=('i686' 'x86_64')
depends=('libtirpc' 'ffmpeg' 'libxaw' 'cairo' 'fftw' 'netpbm' 'gd' 'swig' 'python-numpy'
'openmpi' 'glu' 'freeglut' 'suitesparse' 'cblas' 'scons' 'plplot')
optdepends=('cuda: for nvcc, but not compatible with cuda12')
options=('strip')
_pkgname=${pkgname%-git}
source=($_pkgname::git+https://github.com/ahay/src)
# source=($pkgname::git+https://github.com/ahay/src)
md5sums=('SKIP')
provides=('madagascar')
conflicts=('madagascar')
pkgver() {
cd ${_pkgname}
printf "r%s.%s" "$(git rev-list --count HEAD)" "$(git rev-parse --short HEAD)"
}
build() {
mkdir -p ${srcdir}/${_pkgname}
cd ${srcdir}/${_pkgname}
export RSFROOT=${pkgdir}/opt/${_pkgname}
# hide hwang's src which can not be compiled.
mv ./user/hwang ./user/.hwang
./configure API=c++,f90 --prefix=${RSFROOT}
make
}
package() {
export RSFROOT=${pkgdir}/opt/${_pkgname}
mkdir -p ${RSFROOT}/bin/
export PATH=${RSFROOT}/bin:$PATH
cd ${srcdir}/${_pkgname}
make install
mv ./user/.hwang ./user/hwang
cp -r ${srcdir}/${_pkgname} ${RSFROOT}/src
rm -r ${RSFROOT}/src/.git
chmod a+w ${RSFROOT}/share/madagascar
# add a symlink to rsfcodes in /opt, so that it can be compiled by user
# ln -s ${srcdir}/${_pkgname} ${RSFROOT}/rsfcodes
# chmod -R 755 ${RSFROOT}/rsfcodes
# fix paths in in files
arr[0]="/share/madagascar/etc/config.py"
arr[1]="/share/madagascar/etc/env.sh"
arr[2]="/share/madagascar/etc/env.csh"
_python_version=$(ls $RSFROOT/lib | grep python)
arr[3]="/lib/${_python_version}/site-packages/rsf/prog.py"
arr[4]="/src/config.py"
arr[5]="/src/env.sh"
arr[6]="/src/env.csh"
echo ${pkgdir}
echo ${srcdir}
for f in ${arr[@]} ; do
sed -i "s|${pkgdir}||g" "${RSFROOT}/$f"
sed -i "s|${srcdir}/${_pkgname}|/opt/${_pkgname}/src|g" "${RSFROOT}/$f"
done
install install -dm755 "$pkgdir/usr/share/licenses/$_pkgname"
install -m644 COPYING.txt "$pkgdir/usr/share/licenses/$_pkgname/COPYING.txt"
install -dm755 "$pkgdir/etc/profile.d"
cat > "$pkgdir/etc/profile.d/${_pkgname}.sh" << EOF
#!/bin/sh
source /opt/${_pkgname}/share/madagascar/etc/env.sh
EOF
cat > "$pkgdir/etc/profile.d/${_pkgname}.csh" << EOF
#!/bin/csh
source /opt/${_pkgname}/share/madagascar/etc/env.csh
EOF
chmod 644 "$pkgdir/etc/profile.d/${_pkgname}"{.sh,.csh}
}
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