blob: de7e64e19aaa6a67d7a890b251d16a229a24bea7 (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
|
# Contributor: anon at sansorgan.es
# Contributor: Yingchang Liu
pkgname=madagascar-git
pkgver=r15659.d72996857
pkgrel=1
pkgdesc="Multidimensional data analysis and reproducible computational experiments."
url="https://www.reproducibility.org/wiki/Main_Page"
license=('GPL2')
arch=('i686' 'x86_64')
depends=('libtirpc' 'ffmpeg' 'libxaw' 'cairo' 'fftw' 'netpbm' 'gd' 'swig' 'python'
'openmpi' 'glu' 'freeglut' 'suitesparse')
optdepends=('cuda: for nvcc, but not compatible with cuda12' 'plplot: scientific plot')
options=('strip')
source=($pkgname::git+https://github.com/ahay/src)
md5sums=('SKIP')
pkgver() {
cd ${pkgname}
printf "r%s.%s" "$(git rev-list --count HEAD)" "$(git rev-parse --short HEAD)"
}
build() {
mkdir -p ${srcdir}/${pkgname}
cd ${srcdir}/${pkgname}
export RSFROOT=${pkgdir}/opt/${pkgname}
# fix paths for tirpc in framework/configure.py
sed -i '430,433c\
(plat['\''distro'\''\] == '\''centos'\'' and int(plat['\''version'\''\][0]) >= 8) or \\\
plat['\''distro'\''\] == '\''fedora'\'' or \\\
plat['\''distro'\''\] == '\''arch'\'' or \\\
(plat['\''distro'\''\] == '\''ubuntu'\'' and int(plat['\''version'\''\][:2]) >= 20): \ \
context.env['\''CPPPATH'\''\] = path_get(context,'\''CPPPATH'\'','\''/usr/include/tirpc'\'')' framework/configure.py
./configure
make
}
package() {
export RSFROOT=${pkgdir}/opt/${pkgname}
mkdir -p ${RSFROOT}/bin/
export PATH=${RSFROOT}/bin:$PATH
cd ${srcdir}/${pkgname}
make install
cp -r ${srcdir}/${pkgname} ${pkgdir}/opt/${pkgname}/src
# add a symlink to rsfcodes in /opt, so that it can be compiled by user
ln -s ${srcdir}/${pkgname} ${pkgdir}/opt/${pkgname}/rsfcodes
chmod 755 ${pkgdir}/opt/${pkgname}/rsfcodes
# fix paths in in files
arr[0]="/share/madagascar/etc/config.py"
arr[1]="/share/madagascar/etc/env.sh"
arr[2]="/share/madagascar/etc/env.csh"
_python_version=$(ls $RSFROOT/lib | grep python)
arr[3]="/lib/${_python_version}/site-packages/rsf/prog.py"
arr[4]="/src/config.py"
arr[5]="/src/env.sh"
arr[6]="/src/env.csh"
echo ${pkgdir}
echo ${srcdir}
for f in ${arr[@]} ; do
sed -i "s|${pkgdir}||g" "${RSFROOT}/$f"
sed -i "s|${srcdir}|/opt/${pkgname}/src|g" "${RSFROOT}/$f"
done
install install -dm755 "$pkgdir/usr/share/licenses/$pkgname"
install -m644 COPYING.txt "$pkgdir/usr/share/licenses/$pkgname/COPYING.txt"
install -dm755 "$pkgdir/etc/profile.d"
cat > "$pkgdir/etc/profile.d/${pkgname}.sh" << EOF
#!/bin/sh
source /opt/${pkgname}/src/etc/env.sh
EOF
cat > "$pkgdir/etc/profile.d/${pkgname}.csh" << EOF
#!/bin/csh
source /opt/${pkgname}/src/etc/env.csh
EOF
chmod 755 "$pkgdir/etc/profile.d/${pkgname}"{.sh,.csh}
}
|