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# Maintainer: Guoyi Zhang <guoyi zhang at malacology dot net>
pkgname=mcscanx
_pkgname=MCScanX
pkgver=2022.11.01
pkgrel=1
pkgdesc="Multiple Collinearity Scan toolkit X version https://doi.org/10.1093/nar/gkr1293"
arch=('x86_64')
url="https://github.com/wyp1125/MCScanX"
license=('BSD')
depends=('java-runtime=11' 'glibc')
makedepends=('make' 'git' 'java-environment=11')
optdepends=('perl')
source=(git+https://github.com/wyp1125/MCScanX.git)
sha256sums=('SKIP')
pkgver(){
cd $_pkgname
printf $(TZ=UTC git log --no-walk --pretty="%cd" --decorate=full --date=format-local:%Y.%m.%d | head -n 1)
}
build() {
cd "$_pkgname"
make
}
package() {
cd "$_pkgname"
for bin in "duplicate_gene_classifier" "MCScanX" "MCScanX_h"
do
install -D -m 755 $bin $pkgdir/usr/bin/$bin
done
cd downstream_analyses
for downstream in *.java *.pl detect_collinear_tandem_arrays dissect_multiple_alignment
do
install -D -m 755 $downstream $pkgdir/usr/share/$pkgname/$downstream
done
}
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