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# Maintainer: radioxoma <radioxoma from gmail com>
# Last successful build with 1.4.13.r2306.gf5e50bd 22.01.2014 on x86_64.
pkgname=micromanager-git
pkgver=1.4.13.r2326.g5117eb9
pkgrel=1
epoch=
pkgdesc="Software package for microscopy hardware devices control. CMMCore and python2 bindings only."
arch=('x86_64' 'i686')
url="http://www.micro-manager.org"
license=('LGPL-2.1 BSD GPL-3')
groups=()
depends=('zlib' 'boost' 'libdc1394' 'python2' 'python2-numpy')
makedepends=('git' 'swig')
checkdepends=()
optdepends=()
provides=()
conflicts=()
replaces=()
backup=()
options=()
install=mm.install
changelog=
source=($pkgname::git+https://github.com/mdcurtis/micromanager-upstream.git
'python_makefile.diff'
'python_setup.diff'
'micromanager-lib.conf')
noextract=()
md5sums=('SKIP'
'76a9fb824728a8397e3b5245ffe4ddaf'
'e14361cc344c2fb0d03f3458d53eb152'
'b7b6a68ce53d8ea1a4a29d187174ee4c') #generate with 'makepkg -g'
pkgver() {
cd "$srcdir/$pkgname"
git describe --long | sed -E 's/([^-]*-g)/r\1/;s/-/./g'
}
prepare() {
cd "$srcdir/$pkgname"
# Change python to python2.
# Remove installing commands form makefile and use setuptools instead.
# See PKGBUILD package() function.
patch -p0 < "$srcdir/python_makefile.diff"
# Patching setup.py to prevent
# >>> import MMCorePy
# ...
# ImportError: ./_MMCorePy.so: undefined symbol: _ZTI8CMMError
# ... etc
patch -p0 < "$srcdir/python_setup.diff"
sh mmUnixBuild.sh
}
build() {
cd "$srcdir/$pkgname"
# Without Java-based GUI too.
# Feel free to improve package to work with ImageJ or FIJI.
./configure --prefix=/usr --without-imagej --enable-python
make
}
# check() {
# cd "$srcdir/$pkgname"
# make -k check
# }
package() {
cd "$srcdir/$pkgname"
make DESTDIR="$pkgdir/" install
# Micro-manager devs plan use autotools without setuptools for python.
cd "$srcdir/$pkgname/MMCorePy_wrap/"
python2 setup.py install --root="$pkgdir"
# We need to update ldconfig cache with new libs.
install -D -m644 "$srcdir/micromanager-lib.conf" "$pkgdir/etc/ld.so.conf.d/micromanager-lib.conf"
}
# This script print 'DemoCamera' property list if CMMCore and python bindings
# was installed well.
# $ python2 -c 'import MMCorePy; DEVICE = ["Camera", "DemoCamera", "DCam"]; mmc = MMCorePy.CMMCore(); mmc.loadDevice(*DEVICE); mmc.initializeDevice(DEVICE[0]); mmc.setCameraDevice(DEVICE[0]); print mmc.getDevicePropertyNames(DEVICE[0])'
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