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# Maintainer: Alexander Minges <alexander.minges@gmail.de>
# Contributor: Michael Schubert <mschu.dev at gmail>
# Contributor: yescalona <yescalona@ug_uchile_cl>
# Contributor: Juan Miguel Cejuela <jmcejuela@gmail.com>
# Contributor: Fabio Zanini <iosonofabio@gmail.com>
pkgname=modeller
pkgver=10.5
pkgrel=1
pkgdesc="3D Structure Homology Modeller"
arch=('i686' 'x86_64')
url="http://salilab.org/modeller/"
license=('custom')
depends=('glib2')
optdepends=('python: python support'
'python2: python2 support')
backup=("etc/$pkgname/config.py")
source=("http://www.salilab.org/modeller/$pkgver/$pkgname-$pkgver.tar.gz"{,.sign}
"LICENSE")
sha256sums=('acbee4481d79e669dd0251d5e075902dbe0a7dfeb13f8777c8d602cae64a28ad'
'SKIP'
'7d1fb18e362298bc606d6d99852479dc107ad336e1bcd33362fdeef18cf207fe')
validpgpkeys=('9F7FF1477E5A2463732EC9781CC7D059745E6093')
package() {
_MODINSTALL="/usr/lib/$pkgname"
cd "$pkgname-$pkgver"
case "$CARCH" in
i686)
_EXECUTABLE_TYPE="i386-intel8" ;;
x86_64)
_EXECUTABLE_TYPE="x86_64-intel8" ;;
*)
error "MODELLER is only available for i386 and x86_64!" ;;
esac
# Installing Modeller files
install -dm755 "$pkgdir/$_MODINSTALL/"{bin,lib} "$pkgdir/usr/include"
cp -a README INSTALLATION modlib src "$pkgdir/$_MODINSTALL"
mv "$pkgdir/$_MODINSTALL/src/include" "$pkgdir/usr/include/$pkgname"
ln -s "/usr/include/$pkgname" "$pkgdir/$_MODINSTALL/src/include"
cp -a bin/*.top bin/lib "bin/mod${pkgver}_${_EXECUTABLE_TYPE}" "$pkgdir/$_MODINSTALL/bin"
cp -a "lib/$_EXECUTABLE_TYPE" "$pkgdir/$_MODINSTALL/lib"
install -dm755 "$pkgdir/usr/share/doc/$pkgname"
cp -a doc examples "$pkgdir/usr/share/doc/$pkgname/"
mv "$pkgdir/usr/share/doc/$pkgname/"{doc,html}
ln -s "/usr/share/doc/$pkgname/html" "$pkgdir/$_MODINSTALL/doc"
ln -s "/usr/share/doc/$pkgname/examples" "$pkgdir/$_MODINSTALL/examples"
# Creating Modeller startup scripts
sed -r "s|(EXECUTABLE_TYPE[0-9v]+)=x+|\1=$_EXECUTABLE_TYPE|;s|(MODINSTALL[0-9v]+)=x+|\1=\"$_MODINSTALL\"|" \
bin/modscript > "$pkgdir/$_MODINSTALL/bin/mod$pkgver"
sed 's|@TOPDIR@|"'"$_MODINSTALL"'"|; s|@EXETYPE@|'"$_EXECUTABLE_TYPE"'|' \
bin/modpy.sh.in > "$pkgdir/$_MODINSTALL/bin/modpy.sh"
# sed '1s/^.*$/&2/' bin/modslave.py > "$pkgdir/$_MODINSTALL/bin/modslave.py"
# create symlinks
install -dm755 "$pkgdir/usr/bin"
# for _f in mod$pkgver modpy.sh modslave.py; do
for _f in mod$pkgver modpy.sh; do
chmod +x "$pkgdir/$_MODINSTALL/bin/$_f"
ln -sf "$_MODINSTALL/bin/$_f" "$pkgdir/usr/bin/"
done
# create config.py
install -dm755 "$pkgdir/etc/$pkgname"
echo "license = 'XXXX'" > "$pkgdir/etc/$pkgname/config.py"
ln -s /etc/$pkgname/config.py "$pkgdir/$_MODINSTALL/modlib/modeller/config.py"
# add modeller libs to ld.so.conf
install -dm755 "$pkgdir/etc/ld.so.conf.d"
echo "/usr/lib/$pkgname/lib/$_EXECUTABLE_TYPE" > "$pkgdir/etc/ld.so.conf.d/$pkgname.conf"
# install python modules
for _pyver in 2.7 3.12; do
install -dm755 "$pkgdir/usr/lib/python$_pyver/site-packages"
ln -s "$_MODINSTALL/modlib/modeller" "$pkgdir/usr/lib/python$_pyver/site-packages/modeller"
done
ln -s "$_MODINSTALL/lib/$_EXECUTABLE_TYPE/python2.5/_modeller.so" "$pkgdir/usr/lib/python2.7/site-packages/_modeller.so"
ln -s "$_MODINSTALL/lib/$_EXECUTABLE_TYPE/python3.3/_modeller.so" "$pkgdir/usr/lib/python3.12/site-packages/_modeller.so"
# add profile.d file
install -dm755 "$pkgdir/etc/profile.d"
echo "export MODINSTALL${pkgver/./v}='/usr/lib/modeller'" > "$pkgdir/etc/profile.d/$pkgname.sh"
chmod 755 "$pkgdir/etc/profile.d/$pkgname.sh"
# install license
install -Dm644 "$srcdir/LICENSE" "$pkgdir/usr/share/licenses/$pkgname/LICENSE"
# Adjust directory permissions and ownership
find "$pkgdir" -type d -exec chmod 755 {} +
find "$pkgdir" -exec chown --no-dereference 0:0 {} +
}
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