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# Maintainer: Alexander Minges <alexander.minges@gmail.de>
# Contributor: Michael Schubert <mschu.dev at gmail>
# Contributor: yescalona <yescalona@ug_uchile_cl>
# Contributor: Juan Miguel Cejuela <jmcejuela@gmail.com>
# Contributor: Fabio Zanini <iosonofabio@gmail.com>
pkgname=modeller
pkgver=9.15
pkgrel=2
pkgdesc="3D Structure Homology Modeller"
arch=('i686' 'x86_64')
url="http://salilab.org/modeller/"
license=('custom')
depends=('python2' 'glib2')
optdepends=('python: python3 support')
install=modeller.install
source=("http://www.salilab.org/modeller/$pkgver/modeller-$pkgver.tar.gz")
sha256sums=('9833eace132429abee54f2f7055a55f88ac9990cd79024f95a58d12161ca8eee')
package() {
cd $srcdir/$pkgname-$pkgver
#set default values:
VER="9.15"
VERENV="9v15"
MOD="MODELLER ${VER}"
PROGRAM=mod${VER}
MODINSTALL="${pkgdir}/usr/lib/modeller"
_MODINSTALL="/usr/lib/modeller"
if [ "${CARCH}" = "i686" ]; then
# for i686
EXECUTABLE_TYPE="i386-intel8"
elif [ "${CARCH}" = "x86_64" ]; then
# for x86_64
EXECUTABLE_TYPE="x86_64-intel8"
else
error "MODELLER is only available for i386 and x86_64!"
fi
# Change directory permisssions
find . -type d -exec chmod 755 {} \;
# Installing Modeller files
mkdir -p "${MODINSTALL}"
cp -R README INSTALLATION doc examples modlib src "${MODINSTALL}"
mkdir -p "${MODINSTALL}/bin"
cp -R bin/*.top bin/modslave.py bin/lib bin/${PROGRAM}_${EXECUTABLE_TYPE} \
"${MODINSTALL}/bin"
mkdir -p "${MODINSTALL}/lib"
cp -R lib/${EXECUTABLE_TYPE} "${MODINSTALL}/lib"
# Creating Modeller startup scripts
sed -e "s;EXECUTABLE_TYPE${VERENV}=xxx;EXECUTABLE_TYPE${VERENV}=$EXECUTABLE_TYPE;" \
-e "s;MODINSTALL${VERENV}=xxx;MODINSTALL${VERENV}=\"$_MODINSTALL\";" \
bin/modscript > "${MODINSTALL}/bin/${PROGRAM}"
sed -e "s;@TOPDIR\@;\"$_MODINSTALL\";" \
-e "s;@EXETYPE\@;$EXECUTABLE_TYPE;" \
bin/modpy.sh.in > "${MODINSTALL}/bin/modpy.sh"
chmod a+x "${MODINSTALL}/bin/${PROGRAM}" "${MODINSTALL}/bin/modpy.sh"
sed -e "s;/usr/bin/python;/usr/bin/python2;" \
bin/modslave.py > "${MODINSTALL}/bin/modslave.py"
# Creating simbol link
install -d ${pkgdir}/usr/bin/
ln -sf ${_MODINSTALL}/bin/mod$pkgver ${pkgdir}/usr/bin/mod$pkgver
ln -sf ${_MODINSTALL}/bin/modpy.sh ${pkgdir}/usr/bin/modpy.sh
ln -sf ${_MODINSTALL}/bin/modslave.py ${pkgdir}/usr/bin/modslave.py
# Create config.py is it not exists
if [ ! -f "${_MODINSTALL}/modlib/modeller/config.py" ]; then
msg "Creating '${_MODINSTALL}/config.py'..."
echo "license = 'XXXX'" > "${MODINSTALL}/modlib/modeller/config.py"
msg "Done! Add your license code to '${_MODINSTALL}/config.py'."
else
msg "Found existing config.py. Please check that the license code within this file is correct!"
fi
# Add modeller libs to ld.so.conf
msg "Adding MODELLER to ld.so.conf..."
install -d ${pkgdir}/etc/ld.so.conf.d
echo "/usr/lib/${pkgname}/lib/${EXECUTABLE_TYPE}" > ${pkgdir}/etc/ld.so.conf.d/${pkgname}.conf
# Install python2 module
msg "Installing package for python2..."
install -d ${pkgdir}/usr/lib/python2.7/site-packages
ln -s ${_MODINSTALL}/modlib/modeller ${pkgdir}/usr/lib/python2.7/site-packages/modeller
ln -s ${_MODINSTALL}/lib/${EXECUTABLE_TYPE}/python2.5/_modeller.so ${pkgdir}/usr/lib/python2.7/site-packages/_modeller.so
# Install python3 modules if python3 is installed
if [ -d "/usr/lib/python3.4/site-packages" ]; then
msg "Installing package for python3..."
install -d ${pkgdir}/usr/lib/python3.4/site-packages
ln -s ${_MODINSTALL}/modlib/modeller ${pkgdir}/usr/lib/python3.4/site-packages/modeller
ln -s ${_MODINSTALL}/lib/${EXECUTABLE_TYPE}/python3.3/_modeller.so ${pkgdir}/usr/lib/python3.4/site-packages/_modeller.so
else
msg "Python3 not found! If you want to use modeller within python3, install 'python32' from the AUR and reinstall MODELLER."
fi
}
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