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# Contributor: Joshua Hardy joshinsilico
pkgname='molprobity-git'
pkgver=r1013.ee5bdd4
pkgrel=2
pkgdesc="All-atom structure validation for macromolecular crystallography"
arch=('any')
url="http://molprobity.biochem.duke.edu/"
license=('BSD')
depends=(
'boost-libs'
'java-environment'
'lib32-gcc-libs'
'lib32-libxext'
'lib32-libxt'
'php'
'python'
'tcsh'
'ucsf-chimera'
)
makedepends=(
'curl'
'gawk'
'git'
'make'
'python2'
'subversion'
'tar'
)
provides=("${pkgname%-git}")
conflicts=("${pkgname%-git}")
options=('!strip')
source=(
"${pkgname%-git}::git+https://github.com/rlabduke/MolProbity#branch=molprobity_4.2"
'molprobity.sh'
)
md5sums=(
'SKIP'
'SKIP'
)
pkgver() {
cd "$srcdir/${pkgname%-git}"
printf "r%s.%s" "$(git rev-list --count HEAD)" "$(git rev-parse --short HEAD)"
}
prepare() {
cd "$srcdir/${pkgname%-git}"
sed -i -e s:"python ../sources/cctbx_project/libtbx/configure.py mmtbx":"python2 ../sources/cctbx_project/libtbx/configure.py mmtbx":g configure.sh
}
build() {
cd "$srcdir/${pkgname%-git}"
./configure.sh
./setup.sh
}
package() {
cd "$srcdir/${pkgname%-git}"
install -d "${pkgdir}"/opt/MolProbity "${pkgdir}"/usr/share/licenses/molprobity-git $pkgdir/etc/profile.d/
cp -r * "${pkgdir}"/opt/MolProbity/.
cp LICENSE.html "${pkgdir}"/usr/share/licenses/molprobity-git/.
cp $srcdir/molprobity.sh $pkgdir/etc/profile.d/.
}
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