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# Maintainer: Andrew O'Neill <andrew at meanjollies dot com>
# Contributor: Christian Krause ("wookietreiber") <christian.krause@mailbox.org>
pkgname=mothur
pkgver=1.45.0
pkgrel=1
pkgdesc='A bioinformatics program for analyzing microbial communities.'
arch=('x86_64')
url='https://www.mothur.org/'
license=('GPL3')
depends=('boost-libs')
makedepends=('boost' 'hdf5')
source=("${pkgname}-${pkgver}.tar.gz::https://github.com/${pkgname}/${pkgname}/archive/v.${pkgver}.tar.gz")
sha256sums=('b22e1b4ba8686f4e77e6a55a30a1a1cb6490b651398b0756d84f80314f55aa70')
prepare() {
cd "${pkgname}-v.${pkgver}"
sed -i '87d' source/mothur.h
sed -i 's/skipUchime),/skipUchime), source\/,/g' Makefile
}
build() {
cd "${pkgname}-v.${pkgver}"
make
}
package() {
cd "${pkgname}-v.${pkgver}"
install -Dm755 mothur "${pkgdir}/usr/bin/mothur"
install -Dm755 uchime "${pkgdir}/usr/bin/uchime"
}
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