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# Maintainer: Michael Schubert <mschu.dev at gmail>
# Contributor: Mick Elliot <micke at sfu dot ca>
pkgname=ncbi-toolkit
pkgver=22.0.0
_pkgver=${pkgver//./_}
pkgrel=1
pkgdesc="Applications, scripts and C++ libraries for the analysis of biological data"
arch=('i686' 'x86_64')
url="https://ncbi.github.io/cxx-toolkit/"
license=('custom')
depends=('python2' 'pcre' 'sqlite' 'lzo' 'libtiff' 'giflib' 'libxpm'
'mariadb-libs' 'libpng' 'gnutls' 'libxml2' 'libxslt')
optdepends=('fltk' 'wxgtk' 'fcgi')
makedepends=('autoconf' 'cpio')
provides=('blast+-bin')
conflicts=('blast+-bin')
source=("ftp://ftp.ncbi.nlm.nih.gov/toolbox/ncbi_tools++/2019/Mar_28_2019/ncbi_cxx--$_pkgver.tar.gz"
"LICENSE")
sha256sums=('ef39429bbc7f13c44c0d327432d9cfb430f9f20d10d825e6b2c4ddd7ccce457f'
'78bbf3f310ff43f1b5f711e7221d51da1e6f055831bd6c6941e0650bf1261df2')
build() {
# https://ncbi.github.io/cxx-toolkit/pages/ch_config#ch_config.UNIX
FLAGS="\
--without-debug \
--with-bin-release \
--with-dll \
--without-static \
--with-optimization \
--with-autodep \
--with-mt \
--prefix=/usr \
--with-build-root=$srcdir/build
--without-bdb \
--without-internal \
--without-boost" # current version in repo not compatible
if [ $CARCH = "x86_64" ]; then
FLAGS="$FLAGS --with-64"
fi
cd "$srcdir/ncbi_cxx--$_pkgver"
rm -f "$srcdir"/build/inc/ncbiconf_unix.h # in case of previous build
./configure $FLAGS
make
}
package() {
cd "$srcdir/ncbi_cxx--$_pkgver"
install -Dm644 "$srcdir"/LICENSE "$pkgdir"/usr/share/licenses/$pkgname/license
make prefix="$pkgdir"/usr libdir="$pkgdir"/usr/lib install
find "$pkgdir"/usr/bin -name "*test*" -delete
}
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