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# Maintainer: Andreas Bilke <abilke at cosy dot sbg dot ac dot at>
# Contributor: Myles English <myles at rockhead dot biz>
pkgname=petsc
pkgver=3.8.0
pkgrel=2
_config=linux-c-opt
# if --with-debugging=yes is set then PETSC_ARCH is automatically set to
#"linux-c-debug" for some things, so the _config should be changed too
#_config=linux-c-debug
pkgdesc="Portable, extensible toolkit for scientific computation"
arch=('i686' 'x86_64')
url="https://www.mcs.anl.gov/petsc/"
license=('BSD')
options=(staticlibs)
depends=('python2' 'openmpi' 'boost' 'lapack')
makedepends=('gcc' 'gcc-fortran' 'cmake')
optdepends=('trilinos: support for trilinos'
'ptscotch: support for ptscotch parallel graph partitioning library'
'parmetis: support for parmetis parallel graph partitioning library'
'metis: support for metis graph partitioning library'
'pastix: support for the pastix solver'
'superlu: support for the superlu sparse solver'
'hdf5: support for the parallel version of hdf5'
'mumps: support for the mumps sparse solver'
'fftw: support for the fftw fast Fourier transform'
)
install=petsc.install
source=(http://ftp.mcs.anl.gov/pub/petsc/release-snapshots/${pkgname}-${pkgver/_/-}.tar.gz test_optdepends.sh)
md5sums=('02680f1f78a0d4c5a9de80a366793eb8'
'e60925d1f552303198106bf98eb2bfa5')
sha256sums=('1e1b4d90ccbf98dc5759a956ac9a771310a6690f1cbb37b31502b29568262d7e'
'adff0a432735f6cf4ec2edcb7345ba0d90963bef962b8d9742fa5e9735c0e455')
_install_dir=/opt/petsc/${_config}
petsc_arch="arch-${_config}"
# to avoid: "make[2]: *** No rule to make target `libptesmumps.a', needed by `main_esmumps'. Stop."
export MAKEFLAGS="-j1"
prepare() {
_build_dir="${srcdir}/${pkgname}-${pkgver/_/-}"
# force using python2
find ${srcdir} -name "*" -type f -exec \
sed -i 's#\(/usr/bin/env \|/usr/bin/\)python[2-3]*#\1python2#' {} \;
# install external libraries in _build_dir instead of the prefix
sed -i 's/self.publicInstall = 1/self.publicInstall = 0/' ${_build_dir}/config/BuildSystem/config/package.py
}
build() {
_build_dir="${srcdir}/${pkgname}-${pkgver/_/-}"
cd ${_build_dir}
unset PETSC_ARCH
export PETSC_DIR=${_build_dir}
CONFOPTS="--with-shared-libraries=1 --COPTFLAGS=-O3 --CXXOPTFLAGS=-O3"
# test for the optional dependencies for petsc
CONFOPTS="${CONFOPTS} $(sh ${srcdir}/test_optdepends.sh)"
# to enable use of type()
#CONFOPTS="${CONFOPTS} --with-fortran-datatypes --FOPTFLAGS=-O2"
echo ${CONFOPTS}
python2 ./configure \
--prefix=${_install_dir} \
--PETSC_ARCH=${petsc_arch} \
${CONFOPTS}
make ${MAKEFLAGS} PETSC_DIR=${_build_dir} PETSC_ARCH=${petsc_arch} all
}
check() {
_build_dir="${srcdir}/${pkgname}-${pkgver/_/-}"
cd ${_build_dir}
make test
}
package() {
_build_dir="${srcdir}/${pkgname}-${pkgver/_/-}"
_dest_dir="${pkgdir}${_install_dir}"
cd ${_build_dir}
echo "make ${MAKEFLAGS} PETSC_DIR=${_build_dir} DESTDIR=${_dest_dir} install"
export PETSC_DIR=${_build_dir}
make ${MAKEFLAGS} PETSC_DIR=${_build_dir} DESTDIR=${_dest_dir} install # > /dev/null
sed -i 's#'"${_build_dir}"'#'"${_install_dir}"'#g' "${_dest_dir}/lib/pkgconfig/PETSc.pc"
sed -i 's#'"${_build_dir}"'#'"${_install_dir}"'#g' "${_dest_dir}/lib/petsc/conf/variables"
sed -i 's#'"${_build_dir}"'#'"${_install_dir}"'#g' "${_dest_dir}/lib/petsc/conf/petscvariables"
sed -i 's#'"${_build_dir}"'#'"${_install_dir}"'#g' "${_dest_dir}/lib/petsc/conf/rules"
sed -i 's#'"${_build_dir}"'#'"${_install_dir}"'#g' "${_dest_dir}/include/petscconf.h"
sed -i 's#'"${_build_dir}"'#'"${_install_dir}"'#g' "${_dest_dir}/include/petscconfiginfo.h"
sed -i 's#'"${_build_dir}"'#'"${_install_dir}"'#g' "${_dest_dir}/lib/petsc/conf/petscrules"
export PETSC_DIR=${_install_dir}
# Note: the hyperlinks between documentation, tutorials and examples are
# not perfect yet
# documentation
mkdir -p ${pkgdir}/usr/share/doc/$pkgname/
cp -r ${_build_dir}/docs ${pkgdir}/usr/share/doc/$pkgname/
# tutorials
cp -r ${_build_dir}/tutorials ${pkgdir}/usr/share/doc/$pkgname/
# src for tutorials
cp -r ${_build_dir}/src ${pkgdir}/usr/share/doc/$pkgname/
# html versions of header files
mkdir -p ${pkgdir}/usr/share/doc/$pkgname/include
cp -r ${_build_dir}/include/*.html ${pkgdir}/usr/share/doc/$pkgname/include/
# install licenCe (even though there is no such word as licenSes)
mkdir -p ${pkgdir}/usr/share/licenses/petsc
cp ${_build_dir}/docs/copyright.html ${pkgdir}/usr/share/licenses/$pkgname/
mkdir -p ${pkgdir}/etc/profile.d
echo "export PETSC_DIR=${_install_dir}" > ${pkgdir}/etc/profile.d/petsc.sh
chmod +x ${pkgdir}/etc/profile.d/petsc.sh
# show where the shared libraries are
install -d -m755 "${pkgdir}"/etc/ld.so.conf.d/
echo "${_install_dir}/lib" > "${pkgdir}"/etc/ld.so.conf.d/petsc.conf
}
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