blob: aa6785c2babbd42e14436edeb1c053c74be91b8c (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
|
# Maintainer: Lucas H. Gabrielli <heitzmann@gmail.com>
pkgname=petsc-git
pkgver=20210203
pkgrel=1
_config=linux-c-opt
pkgdesc="Portable, extensible toolkit for scientific computation (external downloads enabled)"
provides=(petsc)
conflicts=(petsc)
arch=('i686' 'x86_64')
url="https://gitlab.com/petsc/petsc"
license=('BSD')
depends=('openmpi' 'lapack' 'fftw' 'hdf5' 'suitesparse' 'metis' 'parmetis' 'superlu' 'eigen' 'cython' 'python-mpi4py')
makedepends=('gcc' 'gcc-fortran' 'cmake' 'sowing' 'python' 'git' 'cython')
optdepends=("opencl: GPU computing"
"hwloc: hardware locality"
"cgns: CFD data support"
"libpng: PNG support"
"libyaml: YAML configuration support"
"libx11: GUI tools")
install=petsc.install
source=(petsc::git+https://gitlab.com/petsc/petsc.git#branch=release)
sha256sums=('SKIP')
_petsc_arch="arch-${_config}"
generic_flags="-fPIC -fopenmp -O3 -march=x86-64 -mtune=generic"
# generic_flags="-fPIC -fopenmp -O3 -march=amdfam10 -mtune=generic"
export COPTFLAGS=-O3
export CXXOPTFLAGS=-O3
export FOPTFLAGS=-O3
export CPPFLAGS="$generic_flags -O2 -D-FORTIFY-SOURCE=2"
export CFLAGS="$generic_flags"
export CXXFLAGS="$generic_flags"
export FFLAGS="$generic_flags"
export FCFLAGS="$generic_flags"
export F90FLAGS="$generic_flags"
export F77FLAGS="$generic_flags"
pkgver() {
cd petsc
git log --format="%cd" --date=short -1 | sed 's/-//g'
}
prepare() {
cd "${srcdir}/petsc"
sed -i 's-\(self.publicInstall[^=]*=[[:space:]]\)[^#]*-\10 -g' config/BuildSystem/config/package.py
}
build() {
cd petsc
declare -a CONFOPTS
CONFOPTS=(
--COPTFLAGS="$COPTFLAGS"
--CXXOPTFLAGS="$CXXOPTFLAGS"
--CPPFLAGS="$CPPFLAGS"
--CFLAGS="$CFLAGS"
--CXXFLAGS="$CXXFLAGS"
--FFLAGS="$FFLAGS"
--FCFLAGS="$FCFLAGS"
--F90FLAGS="$F90FLAGS"
--F77FLAGS="$F77FLAGS"
--with-cxx-dialect=C++11
--with-mpi=1
--with-pic=1
--with-shared-libraries=1
--with-zlib=1
--with-fftw=1
--with-hdf5=1
--with-suitesparse=1
--with-parmetis=1
--with-metis=1
--with-superlu=1
--with-superlu-include=/usr/include/superlu
--with-superlu-lib=superlu
--with-eigen=1
--with-eigen-pkg-config=/usr/share/pkgconfig
--with-scalar-type=complex
--download-scotch=1
--download-ptscotch=1
--download-mumps=1
--download-scalapack=1
--download-hypre=1
--download-petsc4py=1
)
CONFOPTS=( "${CONFOPTS[@]}" )
# Add OpenCL support
OPENCL_DIR="/usr/include/CL/"
if [ -f "${OPENCL_DIR}/cl.h" ]; then
CONFOPTS="${CONFOPTS} --with-opencl=1"
fi
# Add hwloc support
if [ -f "/usr/lib/libhwloc.so" ]; then
CONFOPTS="${CONFOPTS} --with-hwloc=1 --with-hwloc-pkg-config=/usr/lib/pkgconfig/"
fi
# Add CGNS support
if [ -f "/usr/lib/libcgns.so" ]; then
CONFOPTS="${CONFOPTS} --with-cgns=1"
fi
# Add PNG support
if [ -f "/usr/lib/libpng.so" ]; then
CONFOPTS="${CONFOPTS} --with-png=1 --with-png-pkg-config=/usr/lib/pkgconfig/"
fi
# Add YAML support
if [ -f "/usr/lib/libyaml.so" ]; then
CONFOPTS="${CONFOPTS} --with-yaml=1 --with-yaml-pkg-config=/usr/lib/pkgconfig/"
fi
# if --with-debugging=1 is set then PETSC_ARCH is automatically set to
# "linux-c-debug" for some things, so _config should be changed to "linux-c-debug"
#CONFOPTS="${CONFOPTS} --with-debugging=1"
dirpkg=${srcdir}/petsc/${_petsc_arch}/externalpackages/
export PETSC_DIR="${srcdir}/petsc"
export PETSC_ARCH="${_petsc_arch}"
python ./configure LDFLAGS="$LDFLAGS" \
--prefix=/usr/petsc/${_config} \
--MAKEFLAGS="$MAKEFLAGS" \
$(for (( i=1; i<=${#CONFOPTS[@]}; i++)); do echo "${CONFOPTS[$i]}"; done)
make clean
make all
}
package() {
cd petsc
_build_dir="${srcdir}/petsc"
_install_dir=/usr/petsc/${_config}
export PETSC_DIR=${_build_dir}
export PETSC_ARCH="${_petsc_arch}"
make DESTDIR="${pkgdir}" install
# install license
install -Dm 644 ${_build_dir}/LICENSE ${pkgdir}/usr/share/licenses/${pkgname}/LICENSE
mkdir -p "${pkgdir}/etc/profile.d"
echo "export PETSC_DIR=${_install_dir}" > "${pkgdir}/etc/profile.d/petsc.sh"
chmod +x "${pkgdir}/etc/profile.d/petsc.sh"
# show where the shared libraries are
install -dm 755 "${pkgdir}/etc/ld.so.conf.d/"
echo "${_install_dir}/lib" > "${pkgdir}/etc/ld.so.conf.d/petsc.conf"
_rem_dir="${_build_dir}/${_petsc_arch}"
sed -i "s#-L${_rem_dir}/lib ##" "${pkgdir}${_install_dir}/lib/pkgconfig/PETSc.pc"
sed -i "s#-L${_rem_dir}/lib ##" "${pkgdir}${_install_dir}/lib/pkgconfig/petsc.pc"
sed -i "s#${_rem_dir}#${_install_dir}#g" "${pkgdir}${_install_dir}/include/petscmachineinfo.h"
sed -i "s#${_rem_dir}#${_install_dir}#g" "${pkgdir}${_install_dir}/lib/petsc/conf/pkg.conf.mumps"
sed -i "s#${_rem_dir}#${_install_dir}#g" "${pkgdir}${_install_dir}/lib/petsc/conf/pkg.conf.hypre"
sed -i "s#${_rem_dir}#${_install_dir}#g" "${pkgdir}${_install_dir}/lib/petsc/conf/petscvariables"
# install petsc4py
_python_package="${pkgdir}/usr/lib/python3.9/site-packages"
install -Dm 644 "${_rem_dir}/lib/petsc4py-3.14.1-py3.9.egg-info/PKG-INFO" "${_python_package}/petsc4py-3.14.1-py3.9.egg-info/PKG-INFO"
install -Dm 644 "${_rem_dir}/lib/petsc4py-3.14.1-py3.9.egg-info/SOURCES.txt" "${_python_package}/petsc4py-3.14.1-py3.9.egg-info/SOURCES.txt"
install -Dm 644 "${_rem_dir}/lib/petsc4py-3.14.1-py3.9.egg-info/dependency_links.txt" "${_python_package}/petsc4py-3.14.1-py3.9.egg-info/dependency_links.txt"
install -Dm 644 "${_rem_dir}/lib/petsc4py-3.14.1-py3.9.egg-info/not-zip-safe" "${_python_package}/petsc4py-3.14.1-py3.9.egg-info/not-zip-safe"
install -Dm 644 "${_rem_dir}/lib/petsc4py-3.14.1-py3.9.egg-info/requires.txt" "${_python_package}/petsc4py-3.14.1-py3.9.egg-info/requires.txt"
install -Dm 644 "${_rem_dir}/lib/petsc4py-3.14.1-py3.9.egg-info/top_level.txt" "${_python_package}/petsc4py-3.14.1-py3.9.egg-info/top_level.txt"
install -Dm 644 "${_rem_dir}/lib/petsc4py/__init__.py" "${_python_package}/petsc4py/__init__.py"
install -Dm 644 "${_rem_dir}/lib/petsc4py/__main__.py" "${_python_package}/petsc4py/__main__.py"
install -Dm 644 "${_rem_dir}/lib/petsc4py/PETSc.pxd" "${_python_package}/petsc4py/PETSc.pxd"
install -Dm 644 "${_rem_dir}/lib/petsc4py/PETSc.py" "${_python_package}/petsc4py/PETSc.py"
install -Dm 644 "${_rem_dir}/lib/petsc4py/include/petsc4py/__init__.pxd" "${_python_package}/petsc4py/include/petsc4py/__init__.pxd"
install -Dm 644 "${_rem_dir}/lib/petsc4py/include/petsc4py/__init__.pyx" "${_python_package}/petsc4py/include/petsc4py/__init__.pyx"
install -Dm 644 "${_rem_dir}/lib/petsc4py/include/petsc4py/numpy.h" "${_python_package}/petsc4py/include/petsc4py/numpy.h"
install -Dm 644 "${_rem_dir}/lib/petsc4py/include/petsc4py/petsc4py.h" "${_python_package}/petsc4py/include/petsc4py/petsc4py.h"
install -Dm 644 "${_rem_dir}/lib/petsc4py/include/petsc4py/petsc4py.i" "${_python_package}/petsc4py/include/petsc4py/petsc4py.i"
install -Dm 644 "${_rem_dir}/lib/petsc4py/include/petsc4py/petsc4py.PETSc_api.h" "${_python_package}/petsc4py/include/petsc4py/petsc4py.PETSc_api.h"
install -Dm 644 "${_rem_dir}/lib/petsc4py/include/petsc4py/petsc4py.PETSc.h" "${_python_package}/petsc4py/include/petsc4py/petsc4py.PETSc.h"
install -Dm 644 "${_rem_dir}/lib/petsc4py/include/petsc4py/PETSc.pxd" "${_python_package}/petsc4py/include/petsc4py/PETSc.pxd"
install -Dm 644 "${_rem_dir}/lib/petsc4py/lib/__init__.py" "${_python_package}/petsc4py/lib/__init__.py"
install -Dm 644 "${_rem_dir}/lib/petsc4py/lib/petsc.cfg" "${_python_package}/petsc4py/lib/petsc.cfg"
install -Dm 755 "${_rem_dir}/lib/petsc4py/lib/PETSc.cpython-39-x86_64-linux-gnu.so" "${_python_package}/petsc4py/lib/PETSc.cpython-39-x86_64-linux-gnu.so"
}
|