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# $Id: PKGBUILD 57440 2011-10-27 20:16:15Z lcarlier $
# Contributor: Hector <hsearaDOTatDOTgmailDOTcom>
pkgbase=python-msmbuilder
pkgname=('python2-msmbuilder' 'python-msmbuilder')
pkgver=3.3.1
pkgrel=3
pkgdesc='A python package which implements a series of statistical models for high-dimensional time-series'
url='http://msmbuilder.org/'
license=("LGPL")
arch=('i686' 'x86_64')
depends=()
makedepends=('python-mdtraj' 'python2-mdtraj' 'python2-setuptools' 'python-setuptools')
options=('!libtool')
source=("https://github.com/msmbuilder/msmbuilder/archive/${pkgver}.tar.gz"
"patch.i0.c")
sha1sums=('fcb5ad6fabb5aead4c78d3fed782665d090c0caa'
'f0129777e7f9fb28074b86d47d6bb8b94f763063')
prepare() {
cd "$srcdir"
cp patch.i0.c msmbuilder-3.3.1/msmbuilder/hmm/cephes/
cd msmbuilder-3.3.1/msmbuilder/hmm/cephes/
patch i0.c < patch.i0.c
cd "$srcdir"
cp -a msmbuilder-${pkgver} msmbuilder-py2-${pkgver}
}
package_python-msmbuilder() {
depends=('python-mdtraj' 'python-cvxopt' 'python-scikit-learn' 'python-numpydoc')
makedepends=('python-setuptools')
optdepends=()
cd "${srcdir}/msmbuilder-${pkgver}"
msg2 "Building msmbuilder - Python3"
python setup.py build
msg2 "Installing msmbuilder python3"
python setup.py install --root="${pkgdir}/" --optimize=1 --skip-build
# Remove left over directories from distribute utils.
find ${pkgdir} -type d -name "__pycache__" -exec rm -r {} \; -prune
}
package_python2-msmbuilder() {
depends=('python2-mdtraj' 'python2-cvxopt' 'python2-scikit-learn' 'python2-numpydoc')
makedepends=('python2-setuptools')
optdepends=()
cd "${srcdir}/msmbuilder-py2-${pkgver}"
msg2 "Building msmbuilder - Python2"
python2 setup.py build
msg2 "Installing msmbuilder python2"
python2 setup.py install --root="${pkgdir}/" --optimize=1 --skip-build
# Remove left over directories from distribute utils.
find ${pkgdir} -type d -name "__pycache__" -exec rm -r {} \; -prune
#Rename msmb executable to avoid problems with python3 version
cd ${pkgdir}/usr/bin
mv msmb msmb_py2
}
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