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# Maintainer: Liam Timms <timms5000@gmail.com>
# Contributor: Frank Fishburn <frankthefishburn@gmail.com>
## Configuration
## Specify Matlab path (/opt/matlab/R* and /opt/spm12 will be auto-detected and latest one used if there are multiple)
#_MATLAB_DIR=
#_SPM_DIR=
pkgname=python-nipype
_name=${pkgname/python-/}
pkgver=1.4.2
pkgrel=2
pkgdesc='Neuroimaging in python pipelines and interfaces'
arch=('any')
url='https://pypi.python.org/pypi/prov/'
license=('Apache')
depends=('python-etelemetry' 'python-filelock' 'python-matplotlib' 'python-numpy' 'python-numpydoc' 'python-scipy' 'python-networkx' 'python-traits' 'python-dateutil' 'python-nibabel' 'python-future' 'python-simplejson' 'python-prov' 'python-click' 'python-funcsigs' 'python-pytest' 'python-mock' 'python-pydotplus' 'python-pydot' 'python-packaging')
makedepends=('python-sphinx')
optdepends=('python-dipy' 'ants-git' '3dslicer' 'afni' 'freesurfer' 'fsl' 'spm12')
source=("https://github.com/nipy/${_name}/archive/${pkgver}.tar.gz")
sha256sums=('935b660bfd81f773bd5291a90a921cc226f62940950c094be04f080f6c69501d')
_setpaths(){
# Try to auto-detect the matlab install directory
if [ -z "${_MATLAB_DIR}" ]; then
if [ -d "/opt/matlab" ]; then
MATLABCMD=$(find /opt/matlab/R*/bin -mindepth 2 -maxdepth 2 -name MATLAB | sort | tail -n 1 )
fi
else
MATLABCMD=$(find "${_MATLAB_DIR}"/bin -mindepth 2 -maxdepth 2 -name MATLAB | sort | tail -n 1 )
fi
if [ -z "${_SPM_DIR}" ]; then
if [ -e "/opt/spm12" ]; then
_SPM_DIR="/opt/spm12"
fi
fi
if [ ! -z "${_SPM_DIR}" ]; then
export MATLABCMD="${MATLABCMD} -sd ${_SPM_DIR}"
else
export MATLABCMD
fi
}
build() {
cd ${srcdir}/${_name}-${pkgver}
_setpaths
echo "MATLABCMD: ${MATLABCMD}"
python setup.py build
}
package() {
cd $srcdir/${_name}-${pkgver}
python setup.py install --root="${pkgdir}/" --optimize=1
}
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