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# Maintainer: Carlos Aznarán <caznaranl@uni.pe>
# Contributor: Luis Martinez <luis dot martinez at disroot dot org>
# Contributor: Clint Valentine <valentine.clint@gmail.com>
_base=pydna
pkgname=python-${_base}
pkgver=5.2.0
pkgrel=1
pkgdesc="Representing double stranded DNA and functions for simulating cloning and homologous recombination between DNA molecules"
arch=(any)
url="https://github.com/bjornfjohansson/${_base}"
license=('custom:BSD-3-clause')
depends=(python-appdirs python-biopython python-networkx python-prettytable python-pyperclip python-pyfiglet)
makedepends=(python-build python-installer python-poetry-dynamic-versioning python-wheel git)
checkdepends=(python-pytest python-requests-mock ipython) # python-cai2
optdepends=('python-scipy: gel simulation'
'python-matplotlib: gel simulation'
'python-pyparsing: download'
'python-requests: download'
'python-cai2: express')
source=("git+${url}.git?#tag=v${pkgver}")
sha512sums=('SKIP')
build() {
cd ${_base}
python -m build --wheel --skip-dependency-check --no-isolation
}
check() {
cd ${_base}
python -m venv --system-site-packages test-env
test-env/bin/python -m installer dist/*.whl
test-env/bin/python -m pytest
}
package() {
cd ${_base}
PYTHONPYCACHEPREFIX="${PWD}/.cache/cpython/" python -m installer --destdir="${pkgdir}" dist/*.whl
install -Dm644 LICENSE.txt "$pkgdir/usr/share/licenses/$pkgname/LICENSE"
install -Dm644 README.md -t "$pkgdir/usr/share/doc/$pkgname/"
}
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