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# Maintainer: Martin Larralde <martin.larralde@embl.de>
_name=pyskani
pkgname=python-${_name}
pkgver=0.1.1
pkgrel=1
pkgdesc="PyO3 bindings and Python interface to skani, a method for fast fast genomic identity calculation using sparse chaining"
url="https://github.com/althonos/pyskani"
arch=('any')
license=("MIT")
groups=()
makedepends=('python-setuptools' 'python-build' 'python-installer' 'cargo')
depends=('python')
source=("https://files.pythonhosted.org/packages/source/${_name::1}/$_name/$_name-$pkgver.tar.gz")
noextract=()
sha256sums=(f8d7b9b5baddf6444bb66dd112bc0b4b8d504ee7e787b99e96122b8e983a05ea)
prepare() {
cargo fetch --manifest-path "${srcdir}/${_name}-${pkgver}/Cargo.toml" --target "$CARCH-unknown-linux-gnu"
}
build() {
export RUSTUP_TOOLCHAIN=stable
cd "${srcdir}/${_name}-${pkgver}"
python -m build --wheel --no-isolation
}
check() {
local pyver=$(python -c 'import sys; print("{}{}".format(*sys.version_info[:2]))')
local impl=$(python -c 'import platform; print(platform.python_implementation().lower())')
local machine=$(python -c 'import platform; print(platform.machine())')
cd "${srcdir}/${_name}-${pkgver}/build/lib.linux-${machine}-${impl}-${pyver}"
python -m unittest ${_name}.tests
}
package() {
local abitag=$(python -c 'import sys; print(*sys.version_info[:2], sep="")')
local machine=$(python -c 'import platform; print(platform.machine())')
python -m installer --destdir="$pkgdir" "${srcdir}/${_name}-${pkgver}/dist/${_name}-${pkgver}-cp${abitag}-cp${abitag}-linux_${machine}.whl"
install -Dm644 ${srcdir}/${_name}-${pkgver}/COPYING "$pkgdir/usr/share/licenses/$pkgname/COPYING"
}
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