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# Maintainer: bipin kumar <kbipinkumar@pm.me>
pkgname=python-pyvcf3
_name=PyVCF3
pkgver=1.0.4
pkgrel=1
pkgdesc="Variant Call Format (VCF) parser for Python3"
arch=('x86_64')
url=https://github.com/dridk/PyVCF3
license=('BSD-3-Clause')
depends=('python' 'cython' 'glibc' 'python-pysam' 'python-setuptools')
makedepends=('python-setuptools' 'python-pytest' 'git')
#'python-pytest-runner'
source=(${_name}-${pkgver}::git+https://github.com/dridk/PyVCF3.git#tag=1.0.4)
sha256sums=('4ecbf4a554dc75828f00bb6a7b4f0f96d22805fd84b39666dca071265c61aedf')
provides=('python-pyvcf')
conflicts=('python-pyvcf')
build() {
cd "$_name-$pkgver"
python setup.py build
}
check() {
cd "$_name-$pkgver"
local python_version=$(python -c 'import sys; print("".join(map(str, sys.version_info[:2])))')
PYTHONPATH="$PWD/build/lib.linux-$CARCH-cpython-$python_version" pytest
#python setup.py pytest
}
package() {
cd "$_name-$pkgver"
python setup.py install --root="$pkgdir" --optimize=1
install -Dm644 LICENSE "$pkgdir/usr/share/licenses/$pkgname/LICENSE"
}
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