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# Maintainer: Astro Benzene <universebenzene at sina dot com>
# Maintainer: Jaroslav Lichtblau <dragonlord at aur dot archlinux dot org>
# Contributor: Andrzej Giniewicz <gginiu at gmail dot com>
pkgbase=python-scikit-image
_pname=${pkgbase#python-}
_pyname=${_pname/-/_}
pkgname=("python-${_pname}")
pkgver=0.21.0
pkgrel=1
pkgdesc="Image processing routines for SciPy"
arch=('i686' 'x86_64')
url="http://scikit-image.org"
license=('BSD')
makedepends=('cython>=0.29.32'
'python-setuptools'
'python-numpy'
'meson-python'
# 'ninja'
'python-wheel'
'python-build'
'python-installer'
'python-pythran'
'python-packaging>=21')
depends=('python-numpy>=1.21.1' 'python-scipy>=1.8' 'python-networkx>=2.8' 'python-pillow>=9.0.1' 'python-pywavelets>=1.1.1' 'python-imageio>=2.27' 'python-tifffile>=2022.8.12' 'python-packaging>=21' 'python-lazy-loader>=0.2')
checkdepends=('python-pytest>=5.2.0'
'python-pytest-cov>=2.7.0'
'python-matplotlib>=3.5'
# 'python-pytest-flake8'
'python-pytest-localserver'
'python-pooch>=1.6.0')
# 'python-pyqt5')
# 'python-pytest-faulthandler')
optdepends=('python-matplotlib>=3.5'
'freeimage: for reading various types of image file formats'
'python-pyamg: fast cg_mg mode of random walker segmentation'
'python-astropy>=5.0: Provides FITS I/O capability'
'python-simpleitk: Optional I/O plugin providing a wide variety of formats. including specialized formats using in medical imaging'
'python-dask>2021.1.0: used to speed up certain functions'
'python-cloudpickle>=0.2.1: necessary to provide the 'processes' scheduler for dask'
'python-pooch>=1.6.0'
'python-scikit-learn>=0.24.0')
# 'python-imread: Optional I/O plugin providing most standard formats'
# 'python-pyqt5: for imshow[x, fancy=True] and skivi'
# 'pyside2: for imshow[x, fancy=True] and skivi'
# 'python-qtpy'
options=('!emptydirs')
source=("https://files.pythonhosted.org/packages/source/${_pyname:0:1}/${_pyname}/${_pyname}-${pkgver}.tar.gz")
sha256sums=('b33e823c54e6f11873ea390ee49ef832b82b9f70752c8759efd09d5a4e3d87f0')
get_pyver() {
python -c "import sys; print('$1'.join(map(str, sys.version_info[:2])))"
}
#prepare() {
# cd ${srcdir}/${_pyname}-${pkgver}
#
# sed -i -e 's/>=0.13.0rc0//g' -e "/='3.10'/s/numpy==/numpy>=/g" pyproject.toml
#}
build() {
cd ${srcdir}/${_pyname}-${pkgver}
python -m build --wheel --no-isolation --skip-dependency-check
}
check() {
cd "${_pyname}-${pkgver}"
mkdir -p dist/lib
bsdtar -xpf dist/${_pyname/-/_}-${pkgver}-cp$(get_pyver)-cp$(get_pyver)-linux_${CARCH}.whl -C dist/lib
# skip some tests that need lots of online data or cost lots of time
PYTHONPATH="dist/lib" pytest "dist/lib" \
--ignore=dist/lib/skimage/filters/rank/tests/test_rank.py \
--ignore=dist/lib/skimage/io/tests/test_mpl_imshow.py \
--ignore=dist/lib/skimage/color/tests/test_delta_e.py \
--ignore=dist/lib/skimage/io/tests/test_multi_image.py \
--ignore=dist/lib/skimage/io/tests/test_tifffile.py \
--deselect=dist/lib/skimage/color/tests/test_colorconv.py::TestColorconv::test_xyz2lab \
--deselect=dist/lib/skimage/color/tests/test_colorconv.py::TestColorconv::test_lab2xyz \
--deselect=dist/lib/skimage/color/tests/test_colorconv.py::TestColorconv::test_xyz2luv \
--deselect=dist/lib/skimage/color/tests/test_colorconv.py::TestColorconv::test_luv2xyz \
--deselect=dist/lib/skimage/data/tests/test_data.py::test_download_all_with_pooch \
--deselect=dist/lib/skimage/feature/tests/test_hog.py::test_hog_output_correctness_l2hys_norm[float32] \
--deselect=dist/lib/skimage/feature/tests/test_hog.py::test_hog_output_correctness_l1_norm[float32] \
--deselect=dist/lib/skimage/feature/tests/test_hog.py::test_hog_output_correctness_l1_norm[float64] \
--deselect=dist/lib/skimage/feature/tests/test_hog.py::test_hog_output_correctness_l2hys_norm[float64] \
--deselect=dist/lib/skimage/io/tests/test_imageio.py::test_imageio_palette \
--deselect=dist/lib/skimage/io/tests/test_imageio.py::test_imageio_truncated_jpg \
--deselect=dist/lib/skimage/io/tests/test_pil.py::test_imread_palette \
--deselect=dist/lib/skimage/io/tests/test_pil.py::test_imread_index_png_with_alpha \
--deselect=dist/lib/skimage/io/tests/test_pil.py::test_palette_is_gray \
--deselect=dist/lib/skimage/io/tests/test_pil.py::test_imread_uint16 \
--deselect=dist/lib/skimage/io/tests/test_pil.py::test_bilevel \
--deselect=dist/lib/skimage/io/tests/test_pil.py::test_imread_truncated_jpg \
--deselect=dist/lib/skimage/io/tests/test_pil.py::test_jpg_quality_arg \
--deselect=dist/lib/skimage/io/tests/test_pil.py::test_imread_multipage_rgb_tif \
--deselect=dist/lib/skimage/io/tests/test_pil.py::test_extreme_palette \
--deselect=dist/lib/skimage/morphology/tests/test_footprints.py::TestFootprints::test_footprint_disk \
--deselect=dist/lib/skimage/morphology/tests/test_footprints.py::TestFootprints::test_footprint_diamond \
--deselect=dist/lib/skimage/morphology/tests/test_footprints.py::TestFootprints::test_footprint_ball \
--deselect=dist/lib/skimage/morphology/tests/test_footprints.py::TestFootprints::test_footprint_octahedron \
--deselect=dist/lib/skimage/morphology/tests/test_skeletonize_3d.py::test_3d_vs_fiji \
--deselect=dist/lib/skimage/morphology/tests/test_skeletonize.py::TestSkeletonize::test_skeletonize_output \
--deselect=dist/lib/skimage/morphology/tests/test_gray.py::TestMorphology::test_gray_morphology \
--deselect=dist/lib/skimage/restoration/tests/test_restoration.py::test_unsupervised_wiener[float16] \
--deselect=dist/lib/skimage/restoration/tests/test_restoration.py::test_wiener[1-float16] \
--deselect=dist/lib/skimage/restoration/tests/test_restoration.py::test_wiener[1-float32] \
--deselect=dist/lib/skimage/restoration/tests/test_restoration.py::test_wiener[1-float64] \
--deselect=dist/lib/skimage/restoration/tests/test_restoration.py::test_wiener[2-float16] \
--deselect=dist/lib/skimage/restoration/tests/test_restoration.py::test_wiener[2-float32] \
--deselect=dist/lib/skimage/restoration/tests/test_restoration.py::test_wiener[2-float64] \
--deselect=dist/lib/skimage/restoration/tests/test_restoration.py::test_wiener[3-float16] \
--deselect=dist/lib/skimage/restoration/tests/test_restoration.py::test_wiener[3-float32] \
--deselect=dist/lib/skimage/restoration/tests/test_restoration.py::test_wiener[3-float64] \
--deselect=dist/lib/skimage/restoration/tests/test_restoration.py::test_unsupervised_wiener[float32] \
--deselect=dist/lib/skimage/restoration/tests/test_restoration.py::test_unsupervised_wiener[float64] \
--deselect=dist/lib/skimage/restoration/tests/test_restoration.py::test_richardson_lucy[1] \
--deselect=dist/lib/skimage/restoration/tests/test_restoration.py::test_richardson_lucy[2] \
--deselect=dist/lib/skimage/registration/tests/test_masked_phase_cross_correlation.py::test_masked_registration_padfield_data || warning "Tests failed" # -vv --color=yes
# --deselect=dist/lib/skimage/io/tests/test_tifffile.py::test_imread_uint16 \
# --deselect=dist/lib/skimage/io/tests/test_tifffile.py::test_imread_uint16_big_endian \
# --deselect=dist/lib/skimage/io/tests/test_tifffile.py::test_imread_multipage_rgb_tif \
# --deselect=dist/lib/skimage/io/tests/test_multi_image.py::test_shapes \
# --deselect=dist/lib/skimage/color/tests/test_delta_e.py::test_ciede2000_dE[float32-0] \
# --deselect=dist/lib/skimage/color/tests/test_delta_e.py::test_ciede2000_dE[float32-1] \
# --deselect=dist/lib/skimage/color/tests/test_delta_e.py::test_ciede2000_dE[float32--1] \
# --deselect=dist/lib/skimage/color/tests/test_delta_e.py::test_ciede2000_dE[float64-0] \
# --deselect=dist/lib/skimage/color/tests/test_delta_e.py::test_ciede2000_dE[float64-1] \
# --deselect=dist/lib/skimage/color/tests/test_delta_e.py::test_ciede2000_dE[float64--1] \
# --deselect=dist/lib/skimage/color/tests/test_delta_e.py::test_cie76[float32-0] \
# --deselect=dist/lib/skimage/color/tests/test_delta_e.py::test_cie76[float32-1] \
# --deselect=dist/lib/skimage/color/tests/test_delta_e.py::test_cie76[float32--1] \
# _pyver=$(get_pyver)
# for _pyso in build/lib.linux*/skimage/*/*cpython-${_pyver/./}-${CARCH}-linux-gnu.so; do
# ln -rs ${_pyso} ${_pyso#build/lib*/}
# done
# # ImportError: cannot import name 'generic_cy'
# pytest \
# --ignore=skimage/filters/rank/tests/test_rank.py \
# --ignore=skimage/filters/tests/test_median.py \
# --ignore=skimage/future/graph/tests/test_rag.py \
# --ignore=skimage/future/tests/test_trainable_segmentation.py \
# --ignore=skimage/io/tests/test_colormixer.py \
# --ignore=skimage/io/tests/test_histograms.py \
# --ignore=skimage/io/tests/test_plugin_util.py \
# --ignore=skimage/viewer/tests/test_plugins.py || warning "Tests failed"
}
package_python-scikit-image() {
cd ${srcdir}/${_pyname}-${pkgver}
install -Dm644 LICENSE.txt -t "${pkgdir}/usr/share/licenses/${pkgname}"
install -Dm644 README.md -t "${pkgdir}/usr/share/doc/${pkgname}"
python -m installer --destdir="${pkgdir}" dist/*.whl
}
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