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# Maintainer: Astro Benzene <universebenzene at sina dot com>
pkgbase=python-specutils
_pyname=${pkgbase#python-}
pkgname=("python-${_pyname}" "python-${_pyname}-doc")
pkgver=1.18.0
pkgrel=1
pkgdesc="Astropy Affiliated package for 1D spectral operations"
arch=('any')
url="http://specutils.readthedocs.io"
license=('BSD-3-Clause')
makedepends=('python-setuptools-scm'
'python-wheel'
'python-build'
'python-installer'
'python-sphinx-astropy'
'python-matplotlib'
'python-gwcs'
'python-ndcube>=2.0'
# 'python-mpl-animators'
'graphviz')
checkdepends=('python-pytest-astropy-header'
'python-pytest-doctestplus'
# 'python-pytest-xdist'
'python-pytest-remotedata') # matplotlib, gwcs, ndcube already in makedepends; header in conftest.py
source=("https://files.pythonhosted.org/packages/source/${_pyname:0:1}/${_pyname}/${_pyname}-${pkgver}.tar.gz"
"https://stsci.box.com/shared/static/28a88k1qfipo4yxc4p4d40v4axtlal8y.fits"
"https://data.sdss.org/sas/dr16/sdss/spectro/redux/26/spectra/1323/spec-1323-52797-0012.fits"
'use_local_doc_fits_offline.patch')
#https://dr15.sdss.org/sas/dr15/manga/spectro/redux/v2_4_3/8485/stack/manga-8485-1901-LOGRSS.fits.gz
md5sums=('984d531d5168eafe932e19498e40844d'
'6de4c8ee5659e87a302e3de595074ba5'
'3586c5d0810108a182ba9146908dc180'
'49c57591fdc60365a3e31a0f10e4e57d')
prepare() {
cd ${srcdir}/${_pyname}-${pkgver}
cp ${srcdir}/*.fits docs
patch -Np1 -i "${srcdir}/use_local_doc_fits_offline.patch"
# sed -i "/astropy.utils.exceptions/a \ ignore:Subclassing validator classes is not intended:DeprecationWarning" setup.cfg
# sed -i "/astropy.utils.exceptions/a \ ignore:pkg_resources is deprecated as an API:DeprecationWarning" setup.cfg
}
build() {
cd ${srcdir}/${_pyname}-${pkgver}
python -m build --wheel --no-isolation
msg "Building Docs"
PYTHONPATH="../build/lib" make -C docs html
}
check() {
cd ${srcdir}/${_pyname}-${pkgver}
# skip some tests that need lots of online data or cost lots of time
pytest --ignore=docs/_build \
--ignore=specutils/io/asdf/tags/tests/test_spectra.py \
--ignore=specutils/io/default_loaders/tests/test_apogee.py \
--deselect=specutils/tests/test_loaders.py::test_ctypye_not_compliant[remote_data_path0] \
--deselect=specutils/tests/test_loaders.py::test_hst_cos[remote_data_path0] \
--deselect=specutils/tests/test_loaders.py::test_hst_cos[remote_data_path1] \
--deselect=specutils/tests/test_loaders.py::test_hst_stis[remote_data_path0] \
--deselect=specutils/tests/test_loaders.py::test_hst_stis[remote_data_path1] \
--deselect=specutils/tests/test_loaders.py::test_hst_stis[remote_data_path2] \
--deselect=specutils/tests/test_loaders.py::test_apstar_loader \
--deselect=specutils/tests/test_loaders.py::test_manga_cube \
--deselect=specutils/tests/test_loaders.py::test_manga_cube \
--deselect=specutils/tests/test_loaders.py::test_manga_rss \
--deselect=specutils/tests/test_loaders.py::test_sdss_spplate \
--deselect=specutils/tests/test_loaders.py::test_sdss_spspec \
--deselect=specutils/tests/test_loaders.py::test_sdss_compressed[gzip] \
--deselect=specutils/tests/test_loaders.py::test_sdss_compressed[bzip2] \
--deselect=specutils/tests/test_loaders.py::test_sdss_compressed[xz] \
--deselect=specutils/tests/test_loaders.py::TestAAOmega2dF::test_with_rwss[remote_data_path0] \
--deselect=specutils/tests/test_loaders.py::TestAAOmega2dF::test_without_rwss[remote_data_path0] \
--deselect=specutils/tests/test_loaders.py::TestAAOmega2dF::test_with_rwss_guess[remote_data_path0] \
--deselect=specutils/tests/test_loaders.py::TestAAOmega2dF::test_without_rwss_guess[remote_data_path0] \
--deselect=specutils/tests/test_loaders.py::test_apvisit_loader \
--deselect=specutils/tests/test_loaders.py::test_iraf_multispec_chebyshev \
--deselect=specutils/tests/test_loaders.py::test_iraf_multispec_legendre \
--deselect=specutils/tests/test_loaders.py::test_muscles_loader \
--deselect=specutils/tests/test_loaders.py::test_subaru_pfs_loader \
--deselect=specutils/tests/test_spectral_axis.py::test_create_spectral_axis || warning "Tests failed" # -vv -l -ra --color=yes -o console_output_style=count -p xdist -n 4
}
package_python-specutils() {
depends=('python>=3.10' 'python-scipy' 'python-gwcs>=0.18' 'python-ndcube>=2.0') # astropy asdf asdf-astropy required by gwcs
optdepends=('python-specutils-doc: Documentation for Specutils')
cd ${srcdir}/${_pyname}-${pkgver}
install -D -m644 -t "${pkgdir}/usr/share/licenses/${pkgname}" licenses/*
install -D -m644 README.rst -t "${pkgdir}/usr/share/doc/${pkgname}"
python -m installer --destdir="${pkgdir}" dist/*.whl
}
package_python-specutils-doc() {
pkgdesc="Documentation for Python Specutils module"
cd ${srcdir}/${_pyname}-${pkgver}/docs/_build
install -D -m644 -t "${pkgdir}/usr/share/licenses/${pkgname}" ../../licenses/*
install -d -m755 "${pkgdir}/usr/share/doc/${pkgbase}"
cp -a html "${pkgdir}/usr/share/doc/${pkgbase}"
}
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