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# Maintainer: Astro Benzene <universebenzene at sina dot com>
# Contributor: Francois Boulogne <fboulogne at april dot org>
pkgbase=python-tifffile
_pyname=${pkgbase#python-}
pkgname=("python-${_pyname}" "python-${_pyname}-doc")
pkgver=2024.4.18
pkgrel=1
pkgdesc="Read and write image data from and to TIFF files"
arch=('any')
url="https://github.com/cgohlke/tifffile"
license=('BSD-3-Clause')
makedepends=('python-setuptools'
'python-sphinx'
'python-numpy')
#makedepends=('python-setuptools' 'python-wheel' 'python-build' 'python-installer')
checkdepends=('python-pytest'
'python-imagecodecs') # numpy ? xarray
# 'python-fsspec'
source=("https://files.pythonhosted.org/packages/source/${_pyname:0:1}/${_pyname}/${_pyname}-${pkgver}.tar.gz")
sha256sums=('5ffcd77b9d77c3aada1278631af5c8ac788438452fda2eb1b9b60d5553e95c82')
build() {
cd ${srcdir}/${_pyname}-${pkgver}
python setup.py build
# python -m build --wheel --no-isolation
msg "Building Docs"
# PYTHONPATH="../build/lib" make -C docs html
PYTHONPATH="build/lib" python docs/make.py
}
check() {
cd ${srcdir}/${_pyname}-${pkgver}
# From Gentoo's ebuild
PYTHONPATH="build/lib" pytest \
--deselect=tests/test_tifffile.py::test_class_omexml \
--deselect=tests/test_tifffile.py::test_class_omexml_fail \
--deselect=tests/test_tifffile.py::test_class_omexml_modulo \
--deselect=tests/test_tifffile.py::test_class_omexml_attributes \
--deselect=tests/test_tifffile.py::test_class_omexml_multiimage \
--deselect=tests/test_tifffile.py::test_write_ome \
--deselect=tests/test_tifffile.py::test_write_ome_manual \
--deselect=tests/test_tifffile.py::test_write_3gb \
--deselect=tests/test_tifffile.py::test_write_5GB_bigtiff \
--deselect=tests/test_tifffile.py::test_write_5GB_fails \
--deselect=tests/test_tifffile.py::test_write_6gb \
--deselect=tests/test_tifffile.py::test_write_bigtiff \
--deselect=tests/test_tifffile.py::test_write_imagej_raw || warning "Tests failed" # -vv -l -ra --color=yes -o console_output_style=count
# --deselect=tests/test_tifffile.py::test_issue_imagej_hyperstack_arg \
# --deselect=tests/test_tifffile.py::test_issue_description_overwrite \
# --deselect=tests/test_tifffile.py::test_issue_invalid_predictor \
# --deselect=tests/test_tifffile.py::test_issue_trucated_tileoffsets #|| warning "Tests failed" # -vv -l -ra --color=yes -o console_output_style=count
}
package_python-tifffile() {
depends=('python-numpy>=1.26.4')
optdepends=('python-matplotlib>=3.8.3: required for plotting'
'python-imagecodecs>=2024.1.1: required for encoding or decoding LZW, JPEG, etc. compressed segments'
'python-lxml>=5.1.0: required only for validating and printing XML'
'python-zarr>=2.17.0: required for opening Zarr stores'
'python-fsspec>=2023.9.2: required only for opening ReferenceFileSystem files'
'python-tifffile-doc: Documentation for Python tifffile')
cd ${srcdir}/${_pyname}-${pkgver}
install -Dm644 LICENSE -t "${pkgdir}/usr/share/licenses/${pkgname}"
install -Dm644 README.rst -t "${pkgdir}/usr/share/doc/${pkgname}"
install -Dm644 examples/* -t "${pkgdir}/usr/share/doc/${pkgname}/examples"
python setup.py install --root="${pkgdir}" --optimize=1
# python -m installer --destdir="${pkgdir}" dist/*.whl
}
package_python-tifffile-doc() {
pkgdesc="Documentation for Python TIFF files"
cd ${srcdir}/${_pyname}-${pkgver}/docs
install -D -m644 -t "${pkgdir}/usr/share/licenses/${pkgname}" ../LICENSE
install -d -m755 "${pkgdir}/usr/share/doc/${pkgbase}"
cp -a html "${pkgdir}/usr/share/doc/${pkgbase}"
}
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