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# Maintainer: Astro Benzene <universebenzene at sina dot com>
# Contributor: Francois Boulogne <fboulogne at april dot org>
pkgbase=python-tifffile
_pyname=${pkgbase#python-}
pkgname=("python-${_pyname}" "python-${_pyname}-doc")
pkgver=2022.8.3
pkgrel=1
pkgdesc="Read and write image data from and to TIFF files"
arch=('any')
url="https://github.com/cgohlke/tifffile"
license=('BSD')
makedepends=('python-setuptools'
'python-sphinx'
'python-numpy')
#makedepends=('python-setuptools' 'python-wheel' 'python-build' 'python-installer')
checkdepends=('python-pytest' 'python-xarray' 'python-fsspec')
source=("https://files.pythonhosted.org/packages/source/${_pyname:0:1}/${_pyname}/${_pyname}-${pkgver}.tar.gz")
sha256sums=('27bf927b0432fa064bed2426f8bf1778250288a1fc3badb7f4e36ece2e9a6240')
build() {
cd ${srcdir}/${_pyname}-${pkgver}
python setup.py build
# python -m build --wheel --no-isolation
msg "Building Docs"
cd ${srcdir}/${_pyname}-${pkgver}/docs
# PYTHONPATH="../build/lib" make html
PYTHONPATH="../build/lib" python make.py
}
check() {
cd ${srcdir}/${_pyname}-${pkgver}
# From Gentoo's ebuild
PYTHONPATH="build/lib" pytest \
--deselect=tests/test_tifffile.py::test_class_omexml \
--deselect=tests/test_tifffile.py::test_class_omexml_fail \
--deselect=tests/test_tifffile.py::test_class_omexml_modulo \
--deselect=tests/test_tifffile.py::test_class_omexml_attributes \
--deselect=tests/test_tifffile.py::test_class_omexml_multiimage \
--deselect=tests/test_tifffile.py::test_write_ome \
--deselect=tests/test_tifffile.py::test_write_ome_manual \
--deselect=tests/test_tifffile.py::test_write_3gb \
--deselect=tests/test_tifffile.py::test_write_bigtiff \
--deselect=tests/test_tifffile.py::test_write_imagej_raw || warning "Tests failed"
}
package_python-tifffile() {
depends=('python-numpy>=1.21.5')
optdepends=('python-matplotlib>=3.5.2: required for plotting'
'python-imagecodecs>=2022.7.31: required for encoding or decoding LZW, JPEG, etc. compressed segments'
'python-lxml>=4.9.1: required only for validating and printing XML'
'python-zarr>=2.12.0: required for opening Zarr stores'
'python-tifffile-doc: Documentation for Python tifffile')
cd ${srcdir}/${_pyname}-${pkgver}
install -Dm644 LICENSE -t "${pkgdir}/usr/share/licenses/${pkgname}"
install -Dm644 README.rst -t "${pkgdir}/usr/share/doc/${pkgname}"
install -Dm644 examples/* -t "${pkgdir}/usr/share/doc/${pkgname}/examples"
python setup.py install --root="${pkgdir}" --optimize=1
# python -m installer --destdir="${pkgdir}" dist/*.whl
}
package_python-tifffile-doc() {
pkgdesc="Documentation for Python Photutils module"
cd ${srcdir}/${_pyname}-${pkgver}/docs
install -D -m644 -t "${pkgdir}/usr/share/licenses/${pkgname}" ../LICENSE
install -d -m755 "${pkgdir}/usr/share/doc/${pkgbase}"
cp -a html "${pkgdir}/usr/share/doc/${pkgbase}"
}
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